Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02975 and BPHYT_RS02980 are separated by 135 nucleotides BPHYT_RS02980 and BPHYT_RS02985 are separated by 296 nucleotides BPHYT_RS02985 and BPHYT_RS02990 are separated by 202 nucleotides
BPHYT_RS02975: BPHYT_RS02975 - membrane protein, at 662,958 to 664,115
_RS02975
BPHYT_RS02980: BPHYT_RS02980 - single-stranded DNA-binding protein, at 664,251 to 664,790
_RS02980
BPHYT_RS02985: BPHYT_RS02985 - MaoC family dehydratase, at 665,087 to 665,587
_RS02985
BPHYT_RS02990: BPHYT_RS02990 - MFS transporter, at 665,790 to 667,175
_RS02990
Position (kb) 664
665 Strain fitness (log2 ratio) -2
-1
0
1
2 at 663.619 kb on + strand, within BPHYT_RS02975 at 663.620 kb on - strand, within BPHYT_RS02975 at 663.684 kb on + strand, within BPHYT_RS02975 at 663.954 kb on + strand, within BPHYT_RS02975 at 664.074 kb on - strand at 664.074 kb on - strand at 664.075 kb on + strand at 664.947 kb on + strand at 665.019 kb on + strand at 665.168 kb on + strand, within BPHYT_RS02985 at 665.169 kb on - strand, within BPHYT_RS02985 at 665.194 kb on + strand, within BPHYT_RS02985 at 665.541 kb on + strand at 665.542 kb on - strand at 665.545 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 663,619 + BPHYT_RS02975 0.57 -1.8 663,620 - BPHYT_RS02975 0.57 -1.2 663,684 + BPHYT_RS02975 0.63 -2.2 663,954 + BPHYT_RS02975 0.86 -0.7 664,074 - -1.0 664,074 - +0.1 664,075 + -1.2 664,947 + +0.8 665,019 + +0.3 665,168 + BPHYT_RS02985 0.16 +0.6 665,169 - BPHYT_RS02985 0.16 -0.7 665,194 + BPHYT_RS02985 0.21 +2.1 665,541 + +0.8 665,542 - +1.8 665,545 + -1.2
Or see this region's nucleotide sequence