Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02875 and BPHYT_RS02880 are separated by 29 nucleotides BPHYT_RS02880 and BPHYT_RS02885 are separated by 39 nucleotides BPHYT_RS02885 and BPHYT_RS02890 are separated by 97 nucleotides
BPHYT_RS02875: BPHYT_RS02875 - adenine glycosylase, at 641,219 to 642,280
_RS02875
BPHYT_RS02880: BPHYT_RS02880 - ATP-dependent protease, at 642,310 to 642,945
_RS02880
BPHYT_RS02885: BPHYT_RS02885 - glmZ(sRNA)-inactivating NTPase, at 642,985 to 643,878
_RS02885
BPHYT_RS02890: BPHYT_RS02890 - HPr kinase/phosphorylase, at 643,976 to 644,944
_RS02890
Position (kb) 642
643
644 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 642.335 kb on + strand at 642.336 kb on - strand at 642.766 kb on + strand, within BPHYT_RS02880 at 642.767 kb on - strand, within BPHYT_RS02880 at 642.894 kb on + strand at 642.894 kb on + strand at 642.895 kb on - strand at 642.930 kb on + strand at 642.930 kb on + strand at 642.937 kb on - strand at 642.937 kb on - strand at 642.994 kb on + strand at 642.994 kb on + strand at 642.995 kb on - strand at 643.135 kb on + strand, within BPHYT_RS02885 at 643.136 kb on - strand, within BPHYT_RS02885 at 643.139 kb on + strand, within BPHYT_RS02885 at 643.139 kb on + strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.286 kb on + strand, within BPHYT_RS02885 at 643.286 kb on + strand, within BPHYT_RS02885 at 643.287 kb on - strand, within BPHYT_RS02885 at 643.444 kb on - strand, within BPHYT_RS02885 at 643.639 kb on + strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.799 kb on + strand at 643.799 kb on + strand at 643.800 kb on - strand at 643.802 kb on + strand at 643.802 kb on + strand at 643.853 kb on - strand at 643.854 kb on + strand at 643.854 kb on + strand at 643.855 kb on - strand at 643.870 kb on + strand at 643.870 kb on + strand at 643.907 kb on + strand at 643.907 kb on + strand at 643.907 kb on + strand at 643.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 642,335 + -0.2 642,336 - -0.0 642,766 + BPHYT_RS02880 0.72 -2.8 642,767 - BPHYT_RS02880 0.72 -0.1 642,894 + +1.1 642,894 + +0.2 642,895 - -1.2 642,930 + +2.0 642,930 + +1.4 642,937 - -2.1 642,937 - +0.2 642,994 + -1.5 642,994 + -0.5 642,995 - -1.9 643,135 + BPHYT_RS02885 0.17 -2.5 643,136 - BPHYT_RS02885 0.17 -4.3 643,139 + BPHYT_RS02885 0.17 -2.5 643,139 + BPHYT_RS02885 0.17 -5.4 643,140 - BPHYT_RS02885 0.17 -2.3 643,140 - BPHYT_RS02885 0.17 -4.6 643,140 - BPHYT_RS02885 0.17 -5.7 643,140 - BPHYT_RS02885 0.17 -2.8 643,286 + BPHYT_RS02885 0.34 +0.1 643,286 + BPHYT_RS02885 0.34 +1.5 643,287 - BPHYT_RS02885 0.34 -3.2 643,444 - BPHYT_RS02885 0.51 -5.8 643,639 + BPHYT_RS02885 0.73 -3.7 643,640 - BPHYT_RS02885 0.73 -4.2 643,640 - BPHYT_RS02885 0.73 -1.9 643,640 - BPHYT_RS02885 0.73 -2.2 643,799 + -2.7 643,799 + -3.1 643,800 - -2.9 643,802 + -3.0 643,802 + -0.7 643,853 - -4.8 643,854 + -1.9 643,854 + -0.0 643,855 - -1.1 643,870 + -0.2 643,870 + -4.0 643,907 + +1.0 643,907 + +0.3 643,907 + +0.0 643,908 - -0.2
Or see this region's nucleotide sequence