Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02465 and BPHYT_RS02470 are separated by 27 nucleotides BPHYT_RS02470 and BPHYT_RS02475 are separated by 218 nucleotides BPHYT_RS02475 and BPHYT_RS02480 are separated by 31 nucleotides
BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703
_RS02465
BPHYT_RS02470: BPHYT_RS02470 - phosphoserine phosphatase, at 559,731 to 560,414
_RS02470
BPHYT_RS02475: BPHYT_RS02475 - membrane protein, at 560,633 to 562,300
_RS02475
BPHYT_RS02480: BPHYT_RS02480 - alkaline phosphatase, at 562,332 to 563,102
_RS02480
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 559.702 kb on - strand at 559.971 kb on - strand at 560.230 kb on + strand, within BPHYT_RS02470 at 560.269 kb on + strand, within BPHYT_RS02470 at 560.281 kb on + strand, within BPHYT_RS02470 at 560.282 kb on - strand, within BPHYT_RS02470 at 560.395 kb on - strand at 560.431 kb on + strand at 560.431 kb on + strand at 560.510 kb on + strand at 560.554 kb on + strand at 560.555 kb on - strand at 560.562 kb on + strand at 560.562 kb on + strand at 560.563 kb on - strand at 560.632 kb on + strand at 560.633 kb on - strand at 560.633 kb on - strand at 560.646 kb on + strand at 561.477 kb on - strand, within BPHYT_RS02475 at 561.477 kb on - strand, within BPHYT_RS02475 at 561.529 kb on + strand, within BPHYT_RS02475 at 561.786 kb on - strand, within BPHYT_RS02475 at 562.094 kb on + strand, within BPHYT_RS02475 at 562.439 kb on - strand, within BPHYT_RS02480 at 562.471 kb on + strand, within BPHYT_RS02480 at 563.144 kb on + strand at 563.197 kb on - strand at 563.204 kb on + strand at 563.205 kb on - strand at 563.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 559,702 - +0.3 559,971 - +1.4 560,230 + BPHYT_RS02470 0.73 +1.5 560,269 + BPHYT_RS02470 0.79 -0.1 560,281 + BPHYT_RS02470 0.80 +1.4 560,282 - BPHYT_RS02470 0.81 +0.5 560,395 - +0.3 560,431 + +0.3 560,431 + -1.0 560,510 + +1.1 560,554 + +0.7 560,555 - +0.2 560,562 + -0.7 560,562 + +0.1 560,563 - -1.0 560,632 + -1.5 560,633 - +0.5 560,633 - -0.8 560,646 + -1.8 561,477 - BPHYT_RS02475 0.51 +3.3 561,477 - BPHYT_RS02475 0.51 -0.9 561,529 + BPHYT_RS02475 0.54 -2.6 561,786 - BPHYT_RS02475 0.69 +0.4 562,094 + BPHYT_RS02475 0.88 -0.9 562,439 - BPHYT_RS02480 0.14 +1.1 562,471 + BPHYT_RS02480 0.18 +1.3 563,144 + -1.7 563,197 - +0.9 563,204 + +0.7 563,205 - +0.2 563,286 + -0.7
Or see this region's nucleotide sequence