Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02400 and BPHYT_RS02405 are separated by 136 nucleotides BPHYT_RS02405 and BPHYT_RS02410 are separated by 8 nucleotides BPHYT_RS02410 and BPHYT_RS02415 are separated by 320 nucleotides
BPHYT_RS02400: BPHYT_RS02400 - teicoplanin resistance protein VanZ, at 547,547 to 548,704
_RS02400
BPHYT_RS02405: BPHYT_RS02405 - ferredoxin, at 548,841 to 549,164
_RS02405
BPHYT_RS02410: BPHYT_RS02410 - alpha/beta hydrolase, at 549,173 to 549,817
_RS02410
BPHYT_RS02415: BPHYT_RS02415 - cytochrome C550, at 550,138 to 551,367
_RS02415
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.547 kb on - strand, within BPHYT_RS02400 at 548.547 kb on - strand, within BPHYT_RS02400 at 548.658 kb on - strand at 548.658 kb on - strand at 548.763 kb on + strand at 548.765 kb on + strand at 548.765 kb on + strand at 548.765 kb on + strand at 548.766 kb on - strand at 548.853 kb on + strand at 548.853 kb on + strand at 548.853 kb on + strand at 548.947 kb on - strand, within BPHYT_RS02405 at 548.947 kb on - strand, within BPHYT_RS02405 at 549.073 kb on - strand, within BPHYT_RS02405 at 549.073 kb on - strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.079 kb on - strand, within BPHYT_RS02405 at 549.079 kb on - strand, within BPHYT_RS02405 at 549.162 kb on + strand at 549.162 kb on + strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.375 kb on - strand, within BPHYT_RS02410 at 549.375 kb on - strand, within BPHYT_RS02410 at 549.375 kb on - strand at 549.383 kb on + strand, within BPHYT_RS02410 at 549.383 kb on + strand, within BPHYT_RS02410 at 549.816 kb on - strand at 549.851 kb on + strand at 549.868 kb on + strand at 549.869 kb on - strand at 549.891 kb on + strand at 549.891 kb on + strand at 549.911 kb on + strand at 549.911 kb on + strand at 549.912 kb on - strand at 550.138 kb on - strand at 550.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 548,547 - BPHYT_RS02400 0.86 +0.1 548,547 - BPHYT_RS02400 0.86 +0.5 548,658 - +0.1 548,658 - +0.4 548,763 + +0.9 548,765 + +0.8 548,765 + -0.6 548,765 + +1.2 548,766 - +1.3 548,853 + -0.4 548,853 + +0.0 548,853 + -0.5 548,947 - BPHYT_RS02405 0.33 -3.0 548,947 - BPHYT_RS02405 0.33 -0.8 549,073 - BPHYT_RS02405 0.72 +0.2 549,073 - BPHYT_RS02405 0.72 -0.0 549,078 + BPHYT_RS02405 0.73 +0.4 549,078 + BPHYT_RS02405 0.73 +0.6 549,078 + BPHYT_RS02405 0.73 -0.1 549,078 + BPHYT_RS02405 0.73 -0.0 549,079 - BPHYT_RS02405 0.73 +0.9 549,079 - BPHYT_RS02405 0.73 -0.9 549,162 + +0.4 549,162 + +0.2 549,163 - -0.2 549,163 - -0.9 549,163 - -0.1 549,163 - -0.2 549,180 + -0.2 549,180 + +1.4 549,180 + -0.7 549,180 + -0.3 549,180 + +0.3 549,181 - -0.9 549,181 - +0.7 549,181 - +0.3 549,375 - BPHYT_RS02410 0.31 -0.2 549,375 - BPHYT_RS02410 0.31 -0.5 549,375 - +0.9 549,383 + BPHYT_RS02410 0.33 +1.4 549,383 + BPHYT_RS02410 0.33 -0.1 549,816 - -0.4 549,851 + +0.4 549,868 + -2.4 549,869 - -0.4 549,891 + -0.1 549,891 + +0.6 549,911 + +0.7 549,911 + -0.1 549,912 - -1.1 550,138 - +0.1 550,138 - -0.3
Or see this region's nucleotide sequence