Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01815 and BPHYT_RS01820 are separated by 16 nucleotides BPHYT_RS01820 and BPHYT_RS01825 are separated by 371 nucleotides
BPHYT_RS01815: BPHYT_RS01815 - sugar ABC transporter permease, at 411,696 to 412,706
_RS01815
BPHYT_RS01820: BPHYT_RS01820 - sugar ABC transporter ATP-binding protein, at 412,723 to 414,357
_RS01820
BPHYT_RS01825: BPHYT_RS01825 - sugar ABC transporter substrate-binding protein, at 414,729 to 415,748
_RS01825
Position (kb) 412
413
414
415 Strain fitness (log2 ratio) -2
-1
0
1 at 411.793 kb on + strand at 411.841 kb on + strand, within BPHYT_RS01815 at 411.995 kb on - strand, within BPHYT_RS01815 at 412.037 kb on - strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.665 kb on + strand at 412.666 kb on - strand at 412.724 kb on + strand at 412.725 kb on - strand at 412.761 kb on + strand at 412.762 kb on - strand at 412.762 kb on - strand at 413.303 kb on + strand, within BPHYT_RS01820 at 413.323 kb on - strand, within BPHYT_RS01820 at 413.323 kb on - strand, within BPHYT_RS01820 at 413.705 kb on + strand, within BPHYT_RS01820 at 414.063 kb on - strand, within BPHYT_RS01820 at 414.063 kb on - strand, within BPHYT_RS01820 at 414.241 kb on + strand at 414.242 kb on - strand at 414.318 kb on + strand at 414.473 kb on + strand at 414.474 kb on - strand at 414.483 kb on - strand at 414.609 kb on - strand at 414.609 kb on - strand at 414.609 kb on - strand at 414.667 kb on - strand at 414.699 kb on + strand at 414.739 kb on + strand at 414.773 kb on - strand at 415.294 kb on + strand, within BPHYT_RS01825 at 415.294 kb on + strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 411,793 + -0.2 411,841 + BPHYT_RS01815 0.14 -0.9 411,995 - BPHYT_RS01815 0.30 -0.1 412,037 - BPHYT_RS01815 0.34 -1.7 412,137 + BPHYT_RS01815 0.44 +1.5 412,137 + BPHYT_RS01815 0.44 -0.0 412,665 + -0.3 412,666 - -0.0 412,724 + -0.2 412,725 - -2.1 412,761 + +0.8 412,762 - -0.8 412,762 - +0.4 413,303 + BPHYT_RS01820 0.35 +1.2 413,323 - BPHYT_RS01820 0.37 -0.1 413,323 - BPHYT_RS01820 0.37 -0.1 413,705 + BPHYT_RS01820 0.60 -0.2 414,063 - BPHYT_RS01820 0.82 -2.0 414,063 - BPHYT_RS01820 0.82 -1.9 414,241 + +1.2 414,242 - +0.2 414,318 + +0.3 414,473 + +0.4 414,474 - +0.6 414,483 - -0.4 414,609 - +1.0 414,609 - -1.8 414,609 - +1.0 414,667 - -0.0 414,699 + +0.6 414,739 + +1.5 414,773 - -0.2 415,294 + BPHYT_RS01825 0.55 -1.6 415,294 + BPHYT_RS01825 0.55 +0.3 415,295 - BPHYT_RS01825 0.55 +0.8 415,295 - BPHYT_RS01825 0.55 -1.0
Or see this region's nucleotide sequence