Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00965 and BPHYT_RS00970 are separated by 450 nucleotides BPHYT_RS00970 and BPHYT_RS00975 overlap by 14 nucleotides
BPHYT_RS00965: BPHYT_RS00965 - ArsR family transcriptional regulator, at 222,391 to 222,723
_RS00965
BPHYT_RS00970: BPHYT_RS00970 - arsenate reductase, at 223,174 to 223,695
_RS00970
BPHYT_RS00975: BPHYT_RS00975 - arsenic transporter, at 223,682 to 224,743
_RS00975
Position (kb) 223
224 Strain fitness (log2 ratio) -1
0
1
2 at 222.305 kb on - strand at 222.379 kb on + strand at 222.379 kb on + strand at 222.379 kb on + strand at 222.380 kb on - strand at 222.380 kb on - strand at 222.411 kb on - strand at 222.607 kb on + strand, within BPHYT_RS00965 at 222.755 kb on + strand at 222.756 kb on - strand at 222.756 kb on - strand at 222.777 kb on + strand at 222.777 kb on + strand at 222.778 kb on - strand at 222.778 kb on - strand at 222.866 kb on + strand at 222.867 kb on - strand at 223.005 kb on - strand at 223.018 kb on + strand at 223.190 kb on - strand at 223.252 kb on - strand, within BPHYT_RS00970 at 223.252 kb on - strand, within BPHYT_RS00970 at 223.259 kb on + strand, within BPHYT_RS00970 at 223.260 kb on - strand, within BPHYT_RS00970 at 223.351 kb on + strand, within BPHYT_RS00970 at 223.351 kb on + strand, within BPHYT_RS00970 at 223.374 kb on + strand, within BPHYT_RS00970 at 223.565 kb on - strand, within BPHYT_RS00970 at 223.616 kb on + strand, within BPHYT_RS00970 at 223.616 kb on + strand, within BPHYT_RS00970 at 223.616 kb on + strand, within BPHYT_RS00970 at 224.063 kb on + strand, within BPHYT_RS00975 at 224.063 kb on + strand, within BPHYT_RS00975 at 224.254 kb on + strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 222,305 - +1.9 222,379 + +0.5 222,379 + +0.2 222,379 + -0.5 222,380 - -1.6 222,380 - +0.1 222,411 - +1.3 222,607 + BPHYT_RS00965 0.65 +0.3 222,755 + -0.6 222,756 - +0.1 222,756 - +0.4 222,777 + -0.6 222,777 + -0.1 222,778 - +0.3 222,778 - +0.6 222,866 + +1.7 222,867 - -0.2 223,005 - +0.2 223,018 + -1.3 223,190 - +1.2 223,252 - BPHYT_RS00970 0.15 -1.5 223,252 - BPHYT_RS00970 0.15 -0.4 223,259 + BPHYT_RS00970 0.16 -0.8 223,260 - BPHYT_RS00970 0.16 -1.4 223,351 + BPHYT_RS00970 0.34 +0.1 223,351 + BPHYT_RS00970 0.34 -0.3 223,374 + BPHYT_RS00970 0.38 -0.5 223,565 - BPHYT_RS00970 0.75 -0.7 223,616 + BPHYT_RS00970 0.85 -1.1 223,616 + BPHYT_RS00970 0.85 -0.8 223,616 + BPHYT_RS00970 0.85 +1.1 224,063 + BPHYT_RS00975 0.36 +0.1 224,063 + BPHYT_RS00975 0.36 +1.9 224,254 + BPHYT_RS00975 0.54 +0.3 224,280 - BPHYT_RS00975 0.56 -1.1 224,280 - BPHYT_RS00975 0.56 +0.1
Or see this region's nucleotide sequence