Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00870 and BPHYT_RS00875 are separated by 907 nucleotides BPHYT_RS00875 and BPHYT_RS00880 are separated by 880 nucleotides
BPHYT_RS00870: BPHYT_RS00870 - Mobile element protein, at 196,910 to 197,176
_RS00870
BPHYT_RS00875: BPHYT_RS00875 - diguanylate cyclase, at 198,084 to 200,225
_RS00875
BPHYT_RS00880: BPHYT_RS00880 - hypothetical protein, at 201,106 to 202,275
_RS00880
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 197.118 kb on - strand, within BPHYT_RS00870 at 197.159 kb on + strand at 197.160 kb on - strand at 197.165 kb on + strand at 197.292 kb on + strand at 197.293 kb on - strand at 197.553 kb on - strand at 197.668 kb on + strand at 197.678 kb on - strand at 197.680 kb on + strand at 197.680 kb on + strand at 197.681 kb on - strand at 197.681 kb on - strand at 197.681 kb on - strand at 197.782 kb on + strand at 198.004 kb on + strand at 198.004 kb on + strand at 198.005 kb on - strand at 198.032 kb on + strand at 198.075 kb on + strand at 198.076 kb on - strand at 198.076 kb on - strand at 198.077 kb on + strand at 198.078 kb on - strand at 198.078 kb on - strand at 198.078 kb on - strand at 198.089 kb on - strand at 198.149 kb on - strand at 198.361 kb on + strand, within BPHYT_RS00875 at 198.371 kb on + strand, within BPHYT_RS00875 at 198.465 kb on + strand, within BPHYT_RS00875 at 198.520 kb on - strand, within BPHYT_RS00875 at 198.718 kb on + strand, within BPHYT_RS00875 at 199.170 kb on + strand, within BPHYT_RS00875 at 199.194 kb on + strand, within BPHYT_RS00875 at 199.195 kb on - strand, within BPHYT_RS00875 at 199.233 kb on + strand, within BPHYT_RS00875 at 199.291 kb on - strand, within BPHYT_RS00875 at 199.307 kb on + strand, within BPHYT_RS00875 at 199.308 kb on - strand, within BPHYT_RS00875 at 199.308 kb on - strand, within BPHYT_RS00875 at 199.423 kb on - strand, within BPHYT_RS00875 at 199.550 kb on + strand, within BPHYT_RS00875 at 199.636 kb on + strand, within BPHYT_RS00875 at 199.836 kb on + strand, within BPHYT_RS00875 at 199.837 kb on - strand, within BPHYT_RS00875 at 200.246 kb on + strand at 200.246 kb on + strand at 200.246 kb on + strand at 200.247 kb on - strand at 200.299 kb on + strand at 200.300 kb on - strand at 200.628 kb on + strand at 200.885 kb on + strand at 200.885 kb on + strand at 200.886 kb on - strand at 200.953 kb on + strand at 200.954 kb on - strand at 201.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 197,118 - BPHYT_RS00870 0.78 -0.3 197,159 + -0.2 197,160 - +3.1 197,165 + -0.5 197,292 + +0.4 197,293 - -0.1 197,553 - -1.2 197,668 + +0.1 197,678 - -1.9 197,680 + +4.4 197,680 + +2.0 197,681 - -0.3 197,681 - +0.7 197,681 - -1.6 197,782 + +4.0 198,004 + +1.5 198,004 + +5.0 198,005 - -1.3 198,032 + +3.0 198,075 + +1.8 198,076 - -2.3 198,076 - -2.0 198,077 + -0.6 198,078 - -1.6 198,078 - +1.7 198,078 - -0.3 198,089 - -0.5 198,149 - -0.2 198,361 + BPHYT_RS00875 0.13 +0.4 198,371 + BPHYT_RS00875 0.13 +0.6 198,465 + BPHYT_RS00875 0.18 +0.9 198,520 - BPHYT_RS00875 0.20 -1.2 198,718 + BPHYT_RS00875 0.30 +0.6 199,170 + BPHYT_RS00875 0.51 +4.2 199,194 + BPHYT_RS00875 0.52 +4.2 199,195 - BPHYT_RS00875 0.52 -0.6 199,233 + BPHYT_RS00875 0.54 +4.4 199,291 - BPHYT_RS00875 0.56 -1.5 199,307 + BPHYT_RS00875 0.57 +4.1 199,308 - BPHYT_RS00875 0.57 -1.1 199,308 - BPHYT_RS00875 0.57 -0.1 199,423 - BPHYT_RS00875 0.63 -0.8 199,550 + BPHYT_RS00875 0.68 +6.7 199,636 + BPHYT_RS00875 0.72 +6.6 199,836 + BPHYT_RS00875 0.82 +0.0 199,837 - BPHYT_RS00875 0.82 -1.1 200,246 + +4.9 200,246 + +7.3 200,246 + +6.5 200,247 - -0.8 200,299 + +9.1 200,300 - -0.2 200,628 + -1.0 200,885 + -1.4 200,885 + -2.3 200,886 - -1.7 200,953 + +2.6 200,954 - +2.0 201,016 + -1.4
Or see this region's nucleotide sequence