Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00855 and BPHYT_RS00860 are separated by 833 nucleotides
BPHYT_RS00855: BPHYT_RS00855 - hypothetical protein, at 193,560 to 193,820
_RS00855
BPHYT_RS00860: BPHYT_RS00860 - 3-ketoacyl-ACP reductase, at 194,654 to 195,394
_RS00860
Position (kb) 194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 193.673 kb on + strand, within BPHYT_RS00855 at 194.016 kb on - strand at 194.103 kb on - strand at 194.127 kb on + strand at 194.206 kb on - strand at 194.348 kb on - strand at 194.399 kb on + strand at 194.400 kb on - strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.797 kb on + strand, within BPHYT_RS00860 at 194.797 kb on + strand, within BPHYT_RS00860 at 194.801 kb on + strand, within BPHYT_RS00860 at 194.802 kb on - strand, within BPHYT_RS00860 at 194.802 kb on - strand, within BPHYT_RS00860 at 194.822 kb on + strand, within BPHYT_RS00860 at 194.823 kb on - strand, within BPHYT_RS00860 at 194.841 kb on + strand, within BPHYT_RS00860 at 194.937 kb on + strand, within BPHYT_RS00860 at 195.375 kb on + strand at 195.382 kb on + strand at 195.394 kb on + strand at 195.452 kb on + strand at 195.452 kb on + strand at 195.453 kb on - strand at 195.518 kb on + strand at 195.519 kb on - strand at 195.524 kb on + strand at 196.072 kb on + strand at 196.073 kb on - strand at 196.073 kb on - strand at 196.073 kb on - strand at 196.073 kb on - strand at 196.142 kb on - strand at 196.203 kb on - strand at 196.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 193,673 + BPHYT_RS00855 0.43 -0.1 194,016 - -0.4 194,103 - +1.1 194,127 + +0.9 194,206 - -0.2 194,348 - -0.2 194,399 + +0.7 194,400 - +1.3 194,662 + +0.6 194,662 + +0.4 194,797 + BPHYT_RS00860 0.19 -3.0 194,797 + BPHYT_RS00860 0.19 -0.2 194,801 + BPHYT_RS00860 0.20 -2.0 194,802 - BPHYT_RS00860 0.20 -1.0 194,802 - BPHYT_RS00860 0.20 +0.6 194,822 + BPHYT_RS00860 0.23 +0.1 194,823 - BPHYT_RS00860 0.23 -2.0 194,841 + BPHYT_RS00860 0.25 -2.3 194,937 + BPHYT_RS00860 0.38 -1.2 195,375 + -0.3 195,382 + +0.9 195,394 + +1.2 195,452 + -0.6 195,452 + -0.9 195,453 - -0.7 195,518 + -0.3 195,519 - -1.0 195,524 + -0.5 196,072 + +1.4 196,073 - +1.0 196,073 - -3.2 196,073 - -0.7 196,073 - -0.4 196,142 - -1.4 196,203 - -3.2 196,240 - +0.4
Or see this region's nucleotide sequence