Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04127 and SMc04126 overlap by 4 nucleotides SMc04126 and SMc04125 are separated by 4 nucleotides SMc04125 and SMc04124 are separated by 3 nucleotides
SMc04127: SMc04127 - ABC transporter ATP-binding protein, at 147,807 to 149,342
SMc04127
SMc04126: SMc04126 - ABC transporter permease, at 149,339 to 150,472
SMc04126
SMc04125: SMc04125 - ABC transporter permease, at 150,477 to 151,448
SMc04125
SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910
SMc04124
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 148.403 kb on + strand, within SMc04127 at 148.403 kb on + strand, within SMc04127 at 148.897 kb on - strand, within SMc04127 at 148.980 kb on + strand, within SMc04127 at 148.980 kb on + strand, within SMc04127 at 148.980 kb on + strand, within SMc04127 at 148.985 kb on + strand, within SMc04127 at 148.985 kb on + strand, within SMc04127 at 149.113 kb on + strand, within SMc04127 at 149.114 kb on - strand, within SMc04127 at 149.114 kb on - strand, within SMc04127 at 149.345 kb on - strand at 149.352 kb on - strand at 149.352 kb on - strand at 149.378 kb on + strand at 149.379 kb on - strand at 149.472 kb on - strand, within SMc04126 at 149.472 kb on - strand, within SMc04126 at 149.509 kb on + strand, within SMc04126 at 149.509 kb on + strand, within SMc04126 at 149.510 kb on - strand, within SMc04126 at 149.615 kb on + strand, within SMc04126 at 149.616 kb on + strand, within SMc04126 at 149.616 kb on - strand, within SMc04126 at 149.675 kb on + strand, within SMc04126 at 149.675 kb on + strand, within SMc04126 at 149.676 kb on - strand, within SMc04126 at 149.770 kb on + strand, within SMc04126 at 149.770 kb on + strand, within SMc04126 at 149.771 kb on - strand, within SMc04126 at 149.804 kb on - strand, within SMc04126 at 149.822 kb on + strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 150.117 kb on + strand, within SMc04126 at 150.924 kb on + strand, within SMc04125 at 150.925 kb on - strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.961 kb on - strand, within SMc04125 at 151.003 kb on - strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.198 kb on - strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.245 kb on - strand, within SMc04125 at 151.362 kb on - strand at 151.362 kb on - strand at 151.426 kb on + strand at 151.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 148,403 + SMc04127 0.39 +0.6 148,403 + SMc04127 0.39 +0.3 148,897 - SMc04127 0.71 -0.3 148,980 + SMc04127 0.76 +2.8 148,980 + SMc04127 0.76 +1.8 148,980 + SMc04127 0.76 -1.2 148,985 + SMc04127 0.77 -0.7 148,985 + SMc04127 0.77 +0.8 149,113 + SMc04127 0.85 -1.6 149,114 - SMc04127 0.85 +1.2 149,114 - SMc04127 0.85 +1.0 149,345 - -0.3 149,352 - +0.2 149,352 - -0.1 149,378 + +0.4 149,379 - +2.4 149,472 - SMc04126 0.12 -0.2 149,472 - SMc04126 0.12 +0.0 149,509 + SMc04126 0.15 +0.0 149,509 + SMc04126 0.15 -0.9 149,510 - SMc04126 0.15 +0.5 149,615 + SMc04126 0.24 +0.3 149,616 + SMc04126 0.24 +1.0 149,616 - SMc04126 0.24 +0.5 149,675 + SMc04126 0.30 +0.3 149,675 + SMc04126 0.30 -0.3 149,676 - SMc04126 0.30 +0.1 149,770 + SMc04126 0.38 +1.4 149,770 + SMc04126 0.38 +0.7 149,771 - SMc04126 0.38 +1.6 149,804 - SMc04126 0.41 +0.3 149,822 + SMc04126 0.43 -0.2 149,823 - SMc04126 0.43 -0.3 149,823 - SMc04126 0.43 +0.2 149,823 - SMc04126 0.43 -0.0 150,117 + SMc04126 0.69 +0.1 150,924 + SMc04125 0.46 +0.8 150,925 - SMc04125 0.46 +0.9 150,960 + SMc04125 0.50 +1.1 150,960 + SMc04125 0.50 -1.0 150,961 - SMc04125 0.50 +0.1 151,003 - SMc04125 0.54 +0.1 151,197 + SMc04125 0.74 -0.2 151,197 + SMc04125 0.74 +1.7 151,197 + SMc04125 0.74 -0.1 151,198 - SMc04125 0.74 -0.2 151,244 + SMc04125 0.79 +0.6 151,244 + SMc04125 0.79 -1.8 151,244 + SMc04125 0.79 -1.5 151,245 - SMc04125 0.79 +0.2 151,362 - -0.3 151,362 - +0.2 151,426 + +0.2 151,432 - +0.1
Or see this region's nucleotide sequence