Strain Fitness in Sinorhizobium meliloti 1021 around SMc03836

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03834 and SMc03835 are separated by 130 nucleotidesSMc03835 and SMc03836 are separated by 114 nucleotidesSMc03836 and SMc03837 are separated by 22 nucleotidesSMc03837 and SMc03838 overlap by 4 nucleotides SMc03834: SMc03834 - pterin-4-alpha-carbinolamine dehydratase, at 3,500,713 to 3,501,027 SMc03834 SMc03835: SMc03835 - 2'-5' RNA ligase, at 3,501,158 to 3,501,745 SMc03835 SMc03836: SMc03836 - acyl-CoA thioesterase i protein, at 3,501,860 to 3,502,549 SMc03836 SMc03837: SMc03837 - ABC transporter ATP-binding protein, at 3,502,572 to 3,503,291 SMc03837 SMc03838: SMc03838 - hypothetical protein, at 3,503,288 to 3,505,879 SMc03838 Position (kb) 3501 3502 3503Strain fitness (log2 ratio) -1 0 1 2at 3500.938 kb on + strand, within SMc03834at 3501.056 kb on + strandat 3501.056 kb on + strandat 3501.243 kb on + strand, within SMc03835at 3501.244 kb on - strand, within SMc03835at 3501.422 kb on + strand, within SMc03835at 3501.422 kb on + strand, within SMc03835at 3501.639 kb on + strand, within SMc03835at 3501.812 kb on + strandat 3501.812 kb on + strandat 3501.813 kb on - strandat 3501.844 kb on - strandat 3501.917 kb on + strandat 3501.918 kb on - strandat 3501.918 kb on - strandat 3502.008 kb on + strand, within SMc03836at 3502.472 kb on + strand, within SMc03836at 3502.493 kb on + strandat 3502.558 kb on + strandat 3502.559 kb on - strandat 3502.655 kb on - strand, within SMc03837at 3502.655 kb on - strand, within SMc03837at 3502.989 kb on + strand, within SMc03837at 3503.213 kb on - strand, within SMc03837at 3503.414 kb on + strandat 3503.415 kb on - strandat 3503.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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3,500,938 + SMc03834 0.71 -1.1
3,501,056 + +0.5
3,501,056 + -1.3
3,501,243 + SMc03835 0.14 -0.8
3,501,244 - SMc03835 0.15 -1.0
3,501,422 + SMc03835 0.45 +1.9
3,501,422 + SMc03835 0.45 -0.1
3,501,639 + SMc03835 0.82 -0.8
3,501,812 + +0.9
3,501,812 + -0.7
3,501,813 - -0.3
3,501,844 - +0.9
3,501,917 + -0.1
3,501,918 - +2.6
3,501,918 - +0.1
3,502,008 + SMc03836 0.21 +1.3
3,502,472 + SMc03836 0.89 +1.1
3,502,493 + -0.6
3,502,558 + +0.1
3,502,559 - -1.1
3,502,655 - SMc03837 0.12 -0.8
3,502,655 - SMc03837 0.12 +0.2
3,502,989 + SMc03837 0.58 -0.1
3,503,213 - SMc03837 0.89 -0.2
3,503,414 + +0.0
3,503,415 - +2.1
3,503,417 - +0.1

Or see this region's nucleotide sequence