Strain Fitness in Sinorhizobium meliloti 1021 around SMc03086

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03087 and SMc03086 are separated by 144 nucleotidesSMc03086 and SMc03085 are separated by 17 nucleotidesSMc03085 and SMc04444 are separated by 8 nucleotides SMc03087: SMc03087 - chemoreceptor methyl-accepting chemotaxis protein, at 3,259,976 to 3,261,757 SMc03087 SMc03086: SMc03086 - NAD-dependent formate dehydrogenase subunit delta, at 3,261,902 to 3,262,135 SMc03086 SMc03085: SMc03085 - formate dehydrogenase accessory protein, at 3,262,153 to 3,263,025 SMc03085 SMc04444: SMc04444 - NAD-dependent formate dehydrogenase subunit alpha protein, at 3,263,034 to 3,265,913 SMc04444 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3261.255 kb on + strand, within SMc03087at 3261.255 kb on + strand, within SMc03087at 3261.414 kb on + strand, within SMc03087at 3261.414 kb on + strand, within SMc03087at 3261.414 kb on + strand, within SMc03087at 3261.414 kb on + strand, within SMc03087at 3261.694 kb on - strandat 3261.790 kb on + strandat 3261.816 kb on + strandat 3261.816 kb on + strandat 3261.816 kb on + strandat 3261.816 kb on + strandat 3261.816 kb on + strandat 3261.816 kb on + strandat 3261.817 kb on - strandat 3261.817 kb on - strandat 3261.817 kb on - strandat 3261.817 kb on - strandat 3261.817 kb on - strandat 3261.858 kb on + strandat 3261.858 kb on + strandat 3261.911 kb on + strandat 3261.912 kb on - strandat 3261.912 kb on - strandat 3261.986 kb on - strand, within SMc03086at 3262.023 kb on + strand, within SMc03086at 3262.023 kb on + strand, within SMc03086at 3262.105 kb on + strand, within SMc03086at 3262.107 kb on + strand, within SMc03086at 3262.107 kb on + strand, within SMc03086at 3262.108 kb on - strand, within SMc03086at 3262.159 kb on + strandat 3262.505 kb on + strand, within SMc03085at 3262.505 kb on + strand, within SMc03085at 3262.505 kb on + strand, within SMc03085at 3262.505 kb on + strand, within SMc03085at 3262.506 kb on - strand, within SMc03085at 3262.506 kb on - strand, within SMc03085at 3262.506 kb on - strand, within SMc03085at 3262.506 kb on - strand, within SMc03085at 3262.506 kb on - strand, within SMc03085at 3262.657 kb on + strand, within SMc03085at 3262.780 kb on + strand, within SMc03085at 3262.780 kb on + strand, within SMc03085at 3262.780 kb on + strand, within SMc03085at 3262.781 kb on - strand, within SMc03085at 3262.781 kb on - strand, within SMc03085at 3262.895 kb on + strand, within SMc03085at 3262.896 kb on - strand, within SMc03085at 3262.896 kb on - strand, within SMc03085at 3263.036 kb on - strandat 3263.092 kb on + strandat 3263.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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3,261,255 + SMc03087 0.72 -0.4
3,261,255 + SMc03087 0.72 -1.8
3,261,414 + SMc03087 0.81 -0.5
3,261,414 + SMc03087 0.81 +0.0
3,261,414 + SMc03087 0.81 -0.3
3,261,414 + SMc03087 0.81 +0.3
3,261,694 - +0.9
3,261,790 + -0.5
3,261,816 + +3.4
3,261,816 + +0.2
3,261,816 + +0.4
3,261,816 + +0.2
3,261,816 + -0.7
3,261,816 + -0.1
3,261,817 - -0.4
3,261,817 - +2.9
3,261,817 - -0.9
3,261,817 - -0.6
3,261,817 - -0.6
3,261,858 + +0.3
3,261,858 + -0.9
3,261,911 + -0.3
3,261,912 - +0.5
3,261,912 - -0.2
3,261,986 - SMc03086 0.36 +0.3
3,262,023 + SMc03086 0.52 +0.1
3,262,023 + SMc03086 0.52 +0.3
3,262,105 + SMc03086 0.87 +0.6
3,262,107 + SMc03086 0.88 +1.3
3,262,107 + SMc03086 0.88 +0.0
3,262,108 - SMc03086 0.88 +1.6
3,262,159 + +0.2
3,262,505 + SMc03085 0.40 -0.0
3,262,505 + SMc03085 0.40 +1.3
3,262,505 + SMc03085 0.40 -0.5
3,262,505 + SMc03085 0.40 -0.4
3,262,506 - SMc03085 0.40 -0.0
3,262,506 - SMc03085 0.40 -0.3
3,262,506 - SMc03085 0.40 -0.8
3,262,506 - SMc03085 0.40 +0.3
3,262,506 - SMc03085 0.40 -0.8
3,262,657 + SMc03085 0.58 +0.3
3,262,780 + SMc03085 0.72 -0.3
3,262,780 + SMc03085 0.72 -0.3
3,262,780 + SMc03085 0.72 -0.2
3,262,781 - SMc03085 0.72 -0.7
3,262,781 - SMc03085 0.72 -0.9
3,262,895 + SMc03085 0.85 -0.2
3,262,896 - SMc03085 0.85 +0.3
3,262,896 - SMc03085 0.85 +0.2
3,263,036 - -1.5
3,263,092 + -0.9
3,263,093 - +0.8

Or see this region's nucleotide sequence