Strain Fitness in Sinorhizobium meliloti 1021 around SMc02041

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02038 and SMc02039 are separated by 17 nucleotidesSMc02039 and SMc02040 overlap by 403 nucleotidesSMc02040 and SMc02041 are separated by 1 nucleotidesSMc02041 and SMc02042 are separated by 30 nucleotidesSMc02042 and SMc02043 overlap by 4 nucleotides SMc02038: SMc02038 - glycerol dehydrogenase, at 2,744,318 to 2,745,412 SMc02038 SMc02039: SMc02039 - oxidoreductase, at 2,745,430 to 2,746,128 SMc02039 SMc02040: SMc02040 - oxidoreductase, at 2,745,726 to 2,746,157 SMc02040 SMc02041: SMc02041 - short chain dehydrogenase, at 2,746,159 to 2,746,923 SMc02041 SMc02042: SMc02042 - glucose-6-phosphate isomerase, at 2,746,954 to 2,747,598 SMc02042 SMc02043: SMc02043 - KHG/KDPG aldolase, at 2,747,595 to 2,748,248 SMc02043 Position (kb) 2746 2747Strain fitness (log2 ratio) -2 -1 0 1at 2745.211 kb on - strand, within SMc02038at 2745.211 kb on - strand, within SMc02038at 2745.211 kb on - strand, within SMc02038at 2745.329 kb on + strandat 2745.329 kb on + strandat 2745.329 kb on + strandat 2745.330 kb on - strandat 2745.330 kb on - strandat 2745.330 kb on - strandat 2745.355 kb on - strandat 2745.518 kb on - strand, within SMc02039at 2745.607 kb on + strand, within SMc02039at 2745.607 kb on + strand, within SMc02039at 2745.607 kb on + strand, within SMc02039at 2745.608 kb on - strand, within SMc02039at 2745.608 kb on - strand, within SMc02039at 2745.608 kb on - strand, within SMc02039at 2745.933 kb on + strandat 2745.934 kb on - strandat 2746.092 kb on + strandat 2746.477 kb on + strand, within SMc02041at 2746.844 kb on + strand, within SMc02041at 2746.844 kb on + strand, within SMc02041at 2746.845 kb on - strand, within SMc02041at 2746.849 kb on + strandat 2746.849 kb on + strandat 2746.940 kb on + strandat 2746.941 kb on - strandat 2746.941 kb on - strandat 2746.941 kb on - strandat 2746.964 kb on + strandat 2746.964 kb on + strandat 2746.964 kb on + strandat 2747.062 kb on + strand, within SMc02042at 2747.109 kb on + strand, within SMc02042at 2747.110 kb on - strand, within SMc02042at 2747.119 kb on + strand, within SMc02042at 2747.120 kb on - strand, within SMc02042at 2747.209 kb on + strand, within SMc02042at 2747.209 kb on + strand, within SMc02042at 2747.260 kb on + strand, within SMc02042at 2747.260 kb on + strand, within SMc02042at 2747.261 kb on - strand, within SMc02042at 2747.263 kb on + strand, within SMc02042at 2747.264 kb on - strand, within SMc02042at 2747.350 kb on + strand, within SMc02042at 2747.351 kb on - strand, within SMc02042at 2747.363 kb on - strand, within SMc02042at 2747.385 kb on + strand, within SMc02042at 2747.444 kb on - strand, within SMc02042at 2747.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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2,745,211 - SMc02038 0.82 -0.2
2,745,211 - SMc02038 0.82 +0.7
2,745,211 - SMc02038 0.82 +0.3
2,745,329 + -0.2
2,745,329 + +0.1
2,745,329 + +0.0
2,745,330 - +0.4
2,745,330 - -0.3
2,745,330 - -0.2
2,745,355 - +0.4
2,745,518 - SMc02039 0.13 +0.3
2,745,607 + SMc02039 0.25 +0.5
2,745,607 + SMc02039 0.25 -0.0
2,745,607 + SMc02039 0.25 +0.1
2,745,608 - SMc02039 0.25 -0.9
2,745,608 - SMc02039 0.25 +0.4
2,745,608 - SMc02039 0.25 -0.4
2,745,933 + +0.3
2,745,934 - -0.2
2,746,092 + +0.0
2,746,477 + SMc02041 0.42 -0.1
2,746,844 + SMc02041 0.90 -1.2
2,746,844 + SMc02041 0.90 -2.3
2,746,845 - SMc02041 0.90 -0.5
2,746,849 + -0.2
2,746,849 + -0.3
2,746,940 + +0.8
2,746,941 - -0.7
2,746,941 - -1.4
2,746,941 - +0.6
2,746,964 + +0.2
2,746,964 + +1.7
2,746,964 + +0.1
2,747,062 + SMc02042 0.17 -0.1
2,747,109 + SMc02042 0.24 +0.1
2,747,110 - SMc02042 0.24 +1.5
2,747,119 + SMc02042 0.26 +0.3
2,747,120 - SMc02042 0.26 -0.6
2,747,209 + SMc02042 0.40 -0.2
2,747,209 + SMc02042 0.40 -0.8
2,747,260 + SMc02042 0.47 +0.2
2,747,260 + SMc02042 0.47 -0.1
2,747,261 - SMc02042 0.48 +0.4
2,747,263 + SMc02042 0.48 +0.2
2,747,264 - SMc02042 0.48 -0.5
2,747,350 + SMc02042 0.61 +1.7
2,747,351 - SMc02042 0.62 -0.3
2,747,363 - SMc02042 0.63 +0.4
2,747,385 + SMc02042 0.67 +0.2
2,747,444 - SMc02042 0.76 +0.3
2,747,566 + -0.1

Or see this region's nucleotide sequence