Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01817 and SMc01818 are separated by 147 nucleotides SMc01818 and SMc01819 are separated by 398 nucleotides
SMc01817: SMc01817 - transcriptional regulator, at 2,639,631 to 2,640,530
SMc01817
SMc01818: SMc01818 - adenylate cyclase transmembrane protein, at 2,640,678 to 2,642,351
SMc01818
SMc01819: SMc01819 - transcriptional regulator, at 2,642,750 to 2,643,391
SMc01819
Position (kb)
2640
2641
2642
2643 Strain fitness (log2 ratio)
-1
0
1
2 at 2639.826 kb on + strand, within SMc01817 at 2640.528 kb on + strand at 2640.528 kb on + strand at 2640.586 kb on - strand at 2640.594 kb on + strand at 2640.594 kb on + strand at 2640.624 kb on - strand at 2640.861 kb on + strand, within SMc01818 at 2640.861 kb on + strand, within SMc01818 at 2640.907 kb on - strand, within SMc01818 at 2640.907 kb on - strand, within SMc01818 at 2641.032 kb on + strand, within SMc01818 at 2641.033 kb on - strand, within SMc01818 at 2641.042 kb on - strand, within SMc01818 at 2641.192 kb on - strand, within SMc01818 at 2641.192 kb on - strand, within SMc01818 at 2641.300 kb on - strand, within SMc01818 at 2641.328 kb on + strand, within SMc01818 at 2641.359 kb on + strand, within SMc01818 at 2641.430 kb on + strand, within SMc01818 at 2641.645 kb on + strand, within SMc01818 at 2641.645 kb on + strand, within SMc01818 at 2642.461 kb on + strand at 2642.461 kb on + strand at 2642.461 kb on + strand at 2642.461 kb on + strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.462 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.466 kb on - strand at 2642.914 kb on - strand, within SMc01819 at 2643.102 kb on + strand, within SMc01819 at 2643.102 kb on + strand, within SMc01819 at 2643.182 kb on + strand, within SMc01819 at 2643.182 kb on + strand, within SMc01819 at 2643.182 kb on + strand, within SMc01819 at 2643.223 kb on - strand, within SMc01819
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 2,639,826 + SMc01817 0.22 +0.7 2,640,528 + +1.4 2,640,528 + +0.1 2,640,586 - -0.0 2,640,594 + -0.2 2,640,594 + +0.2 2,640,624 - +0.7 2,640,861 + SMc01818 0.11 +1.4 2,640,861 + SMc01818 0.11 -0.4 2,640,907 - SMc01818 0.14 -0.3 2,640,907 - SMc01818 0.14 -1.3 2,641,032 + SMc01818 0.21 +1.3 2,641,033 - SMc01818 0.21 -0.0 2,641,042 - SMc01818 0.22 +1.0 2,641,192 - SMc01818 0.31 +1.7 2,641,192 - SMc01818 0.31 +0.1 2,641,300 - SMc01818 0.37 +0.1 2,641,328 + SMc01818 0.39 +0.0 2,641,359 + SMc01818 0.41 +1.1 2,641,430 + SMc01818 0.45 +2.1 2,641,645 + SMc01818 0.58 -0.0 2,641,645 + SMc01818 0.58 +0.5 2,642,461 + +0.4 2,642,461 + +0.5 2,642,461 + +0.4 2,642,461 + +0.1 2,642,462 - +0.2 2,642,462 - +0.5 2,642,462 - +0.8 2,642,462 - +0.5 2,642,462 - +0.6 2,642,462 - -0.6 2,642,462 - +0.7 2,642,462 - -0.3 2,642,462 - +0.6 2,642,462 - +0.1 2,642,466 - -1.5 2,642,466 - +0.3 2,642,466 - +0.2 2,642,466 - +0.5 2,642,466 - +0.4 2,642,466 - +0.4 2,642,466 - -0.8 2,642,466 - -0.0 2,642,466 - -0.0 2,642,914 - SMc01819 0.26 -0.6 2,643,102 + SMc01819 0.55 -0.2 2,643,102 + SMc01819 0.55 +0.4 2,643,182 + SMc01819 0.67 -0.1 2,643,182 + SMc01819 0.67 -0.1 2,643,182 + SMc01819 0.67 -0.1 2,643,223 - SMc01819 0.74 -1.1
Or see this region's nucleotide sequence