Strain Fitness in Sinorhizobium meliloti 1021 around SMc01818

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01817 and SMc01818 are separated by 147 nucleotidesSMc01818 and SMc01819 are separated by 398 nucleotides SMc01817: SMc01817 - transcriptional regulator, at 2,639,631 to 2,640,530 SMc01817 SMc01818: SMc01818 - adenylate cyclase transmembrane protein, at 2,640,678 to 2,642,351 SMc01818 SMc01819: SMc01819 - transcriptional regulator, at 2,642,750 to 2,643,391 SMc01819 Position (kb) 2640 2641 2642 2643Strain fitness (log2 ratio) -1 0 1 2at 2639.826 kb on + strand, within SMc01817at 2640.528 kb on + strandat 2640.528 kb on + strandat 2640.586 kb on - strandat 2640.594 kb on + strandat 2640.594 kb on + strandat 2640.624 kb on - strandat 2640.861 kb on + strand, within SMc01818at 2640.861 kb on + strand, within SMc01818at 2640.907 kb on - strand, within SMc01818at 2640.907 kb on - strand, within SMc01818at 2641.032 kb on + strand, within SMc01818at 2641.033 kb on - strand, within SMc01818at 2641.042 kb on - strand, within SMc01818at 2641.192 kb on - strand, within SMc01818at 2641.192 kb on - strand, within SMc01818at 2641.300 kb on - strand, within SMc01818at 2641.328 kb on + strand, within SMc01818at 2641.359 kb on + strand, within SMc01818at 2641.430 kb on + strand, within SMc01818at 2641.645 kb on + strand, within SMc01818at 2641.645 kb on + strand, within SMc01818at 2642.461 kb on + strandat 2642.461 kb on + strandat 2642.461 kb on + strandat 2642.461 kb on + strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.462 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.466 kb on - strandat 2642.914 kb on - strand, within SMc01819at 2643.102 kb on + strand, within SMc01819at 2643.102 kb on + strand, within SMc01819at 2643.182 kb on + strand, within SMc01819at 2643.182 kb on + strand, within SMc01819at 2643.182 kb on + strand, within SMc01819at 2643.223 kb on - strand, within SMc01819

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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2,639,826 + SMc01817 0.22 +0.7
2,640,528 + +1.4
2,640,528 + +0.1
2,640,586 - -0.0
2,640,594 + -0.2
2,640,594 + +0.2
2,640,624 - +0.7
2,640,861 + SMc01818 0.11 +1.4
2,640,861 + SMc01818 0.11 -0.4
2,640,907 - SMc01818 0.14 -0.3
2,640,907 - SMc01818 0.14 -1.3
2,641,032 + SMc01818 0.21 +1.3
2,641,033 - SMc01818 0.21 -0.0
2,641,042 - SMc01818 0.22 +1.0
2,641,192 - SMc01818 0.31 +1.7
2,641,192 - SMc01818 0.31 +0.1
2,641,300 - SMc01818 0.37 +0.1
2,641,328 + SMc01818 0.39 +0.0
2,641,359 + SMc01818 0.41 +1.1
2,641,430 + SMc01818 0.45 +2.1
2,641,645 + SMc01818 0.58 -0.0
2,641,645 + SMc01818 0.58 +0.5
2,642,461 + +0.4
2,642,461 + +0.5
2,642,461 + +0.4
2,642,461 + +0.1
2,642,462 - +0.2
2,642,462 - +0.5
2,642,462 - +0.8
2,642,462 - +0.5
2,642,462 - +0.6
2,642,462 - -0.6
2,642,462 - +0.7
2,642,462 - -0.3
2,642,462 - +0.6
2,642,462 - +0.1
2,642,466 - -1.5
2,642,466 - +0.3
2,642,466 - +0.2
2,642,466 - +0.5
2,642,466 - +0.4
2,642,466 - +0.4
2,642,466 - -0.8
2,642,466 - -0.0
2,642,466 - -0.0
2,642,914 - SMc01819 0.26 -0.6
2,643,102 + SMc01819 0.55 -0.2
2,643,102 + SMc01819 0.55 +0.4
2,643,182 + SMc01819 0.67 -0.1
2,643,182 + SMc01819 0.67 -0.1
2,643,182 + SMc01819 0.67 -0.1
2,643,223 - SMc01819 0.74 -1.1

Or see this region's nucleotide sequence