Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00887 and SMc00929 overlap by 25 nucleotides SMc00929 and SMc00886 are separated by 81 nucleotides
SMc00887: SMc00887 - hypothetical protein, at 896,981 to 898,327
SMc00887
SMc00929: SMc00929 - transcriptional regulator, at 898,303 to 899,283
SMc00929
SMc00886: SMc00886 - hypothetical protein, at 899,365 to 900,909
SMc00886
Position (kb)
898
899
900 Strain fitness (log2 ratio)
-2
-1
0
1 at 897.522 kb on - strand, within SMc00887 at 897.696 kb on - strand, within SMc00887 at 897.883 kb on - strand, within SMc00887 at 897.883 kb on - strand, within SMc00887 at 898.077 kb on + strand, within SMc00887 at 898.077 kb on + strand, within SMc00887 at 898.078 kb on - strand, within SMc00887 at 898.078 kb on - strand, within SMc00887 at 898.126 kb on + strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.247 kb on + strand at 898.247 kb on + strand at 898.254 kb on - strand at 898.289 kb on + strand at 898.290 kb on - strand at 898.448 kb on + strand, within SMc00929 at 898.449 kb on - strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.743 kb on + strand, within SMc00929 at 898.744 kb on - strand, within SMc00929 at 898.745 kb on + strand, within SMc00929 at 898.745 kb on + strand, within SMc00929 at 898.746 kb on - strand, within SMc00929 at 898.799 kb on + strand, within SMc00929 at 899.334 kb on + strand at 899.459 kb on - strand at 899.472 kb on + strand at 899.472 kb on + strand at 899.474 kb on + strand at 899.474 kb on + strand at 899.475 kb on - strand at 899.483 kb on - strand at 899.483 kb on - strand at 899.753 kb on - strand, within SMc00886 at 899.753 kb on - strand, within SMc00886 at 899.753 kb on - strand, within SMc00886 at 899.753 kb on - strand, within SMc00886 at 899.923 kb on + strand, within SMc00886 at 899.924 kb on - strand, within SMc00886 at 899.924 kb on - strand, within SMc00886 at 899.933 kb on + strand, within SMc00886 at 899.933 kb on + strand, within SMc00886 at 899.934 kb on - strand, within SMc00886 at 899.934 kb on - strand, within SMc00886 at 899.934 kb on - strand, within SMc00886 at 899.967 kb on + strand, within SMc00886 at 899.967 kb on + strand, within SMc00886
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 897,522 - SMc00887 0.40 +0.2 897,696 - SMc00887 0.53 +0.0 897,883 - SMc00887 0.67 +0.1 897,883 - SMc00887 0.67 -2.0 898,077 + SMc00887 0.81 -0.7 898,077 + SMc00887 0.81 +0.6 898,078 - SMc00887 0.81 +0.5 898,078 - SMc00887 0.81 -1.4 898,126 + SMc00887 0.85 +0.9 898,127 - SMc00887 0.85 -0.1 898,127 - SMc00887 0.85 -0.9 898,127 - SMc00887 0.85 +0.6 898,247 + +0.5 898,247 + -0.3 898,254 - +0.2 898,289 + +0.6 898,290 - +1.3 898,448 + SMc00929 0.15 +1.2 898,449 - SMc00929 0.15 -1.3 898,583 + SMc00929 0.29 +0.2 898,583 + SMc00929 0.29 +0.8 898,583 + SMc00929 0.29 +0.9 898,743 + SMc00929 0.45 -0.5 898,744 - SMc00929 0.45 +0.8 898,745 + SMc00929 0.45 +0.1 898,745 + SMc00929 0.45 +0.2 898,746 - SMc00929 0.45 +0.2 898,799 + SMc00929 0.51 -0.9 899,334 + -0.0 899,459 - +1.2 899,472 + +0.5 899,472 + +0.6 899,474 + +0.1 899,474 + -0.5 899,475 - -0.9 899,483 - +0.4 899,483 - -0.4 899,753 - SMc00886 0.25 -0.3 899,753 - SMc00886 0.25 +0.5 899,753 - SMc00886 0.25 +0.4 899,753 - SMc00886 0.25 +0.1 899,923 + SMc00886 0.36 +0.3 899,924 - SMc00886 0.36 +0.1 899,924 - SMc00886 0.36 -0.1 899,933 + SMc00886 0.37 -0.2 899,933 + SMc00886 0.37 -0.6 899,934 - SMc00886 0.37 +0.2 899,934 - SMc00886 0.37 +0.3 899,934 - SMc00886 0.37 +0.0 899,967 + SMc00886 0.39 +0.7 899,967 + SMc00886 0.39 +0.6
Or see this region's nucleotide sequence