Strain Fitness in Sinorhizobium meliloti 1021 around SMc00929

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00887 and SMc00929 overlap by 25 nucleotidesSMc00929 and SMc00886 are separated by 81 nucleotides SMc00887: SMc00887 - hypothetical protein, at 896,981 to 898,327 SMc00887 SMc00929: SMc00929 - transcriptional regulator, at 898,303 to 899,283 SMc00929 SMc00886: SMc00886 - hypothetical protein, at 899,365 to 900,909 SMc00886 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1at 897.522 kb on - strand, within SMc00887at 897.696 kb on - strand, within SMc00887at 897.883 kb on - strand, within SMc00887at 897.883 kb on - strand, within SMc00887at 898.077 kb on + strand, within SMc00887at 898.077 kb on + strand, within SMc00887at 898.078 kb on - strand, within SMc00887at 898.078 kb on - strand, within SMc00887at 898.126 kb on + strand, within SMc00887at 898.127 kb on - strand, within SMc00887at 898.127 kb on - strand, within SMc00887at 898.127 kb on - strand, within SMc00887at 898.247 kb on + strandat 898.247 kb on + strandat 898.254 kb on - strandat 898.289 kb on + strandat 898.290 kb on - strandat 898.448 kb on + strand, within SMc00929at 898.449 kb on - strand, within SMc00929at 898.583 kb on + strand, within SMc00929at 898.583 kb on + strand, within SMc00929at 898.583 kb on + strand, within SMc00929at 898.743 kb on + strand, within SMc00929at 898.744 kb on - strand, within SMc00929at 898.745 kb on + strand, within SMc00929at 898.745 kb on + strand, within SMc00929at 898.746 kb on - strand, within SMc00929at 898.799 kb on + strand, within SMc00929at 899.334 kb on + strandat 899.459 kb on - strandat 899.472 kb on + strandat 899.472 kb on + strandat 899.474 kb on + strandat 899.474 kb on + strandat 899.475 kb on - strandat 899.483 kb on - strandat 899.483 kb on - strandat 899.753 kb on - strand, within SMc00886at 899.753 kb on - strand, within SMc00886at 899.753 kb on - strand, within SMc00886at 899.753 kb on - strand, within SMc00886at 899.923 kb on + strand, within SMc00886at 899.924 kb on - strand, within SMc00886at 899.924 kb on - strand, within SMc00886at 899.933 kb on + strand, within SMc00886at 899.933 kb on + strand, within SMc00886at 899.934 kb on - strand, within SMc00886at 899.934 kb on - strand, within SMc00886at 899.934 kb on - strand, within SMc00886at 899.967 kb on + strand, within SMc00886at 899.967 kb on + strand, within SMc00886

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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897,522 - SMc00887 0.40 +0.2
897,696 - SMc00887 0.53 +0.0
897,883 - SMc00887 0.67 +0.1
897,883 - SMc00887 0.67 -2.0
898,077 + SMc00887 0.81 -0.7
898,077 + SMc00887 0.81 +0.6
898,078 - SMc00887 0.81 +0.5
898,078 - SMc00887 0.81 -1.4
898,126 + SMc00887 0.85 +0.9
898,127 - SMc00887 0.85 -0.1
898,127 - SMc00887 0.85 -0.9
898,127 - SMc00887 0.85 +0.6
898,247 + +0.5
898,247 + -0.3
898,254 - +0.2
898,289 + +0.6
898,290 - +1.3
898,448 + SMc00929 0.15 +1.2
898,449 - SMc00929 0.15 -1.3
898,583 + SMc00929 0.29 +0.2
898,583 + SMc00929 0.29 +0.8
898,583 + SMc00929 0.29 +0.9
898,743 + SMc00929 0.45 -0.5
898,744 - SMc00929 0.45 +0.8
898,745 + SMc00929 0.45 +0.1
898,745 + SMc00929 0.45 +0.2
898,746 - SMc00929 0.45 +0.2
898,799 + SMc00929 0.51 -0.9
899,334 + -0.0
899,459 - +1.2
899,472 + +0.5
899,472 + +0.6
899,474 + +0.1
899,474 + -0.5
899,475 - -0.9
899,483 - +0.4
899,483 - -0.4
899,753 - SMc00886 0.25 -0.3
899,753 - SMc00886 0.25 +0.5
899,753 - SMc00886 0.25 +0.4
899,753 - SMc00886 0.25 +0.1
899,923 + SMc00886 0.36 +0.3
899,924 - SMc00886 0.36 +0.1
899,924 - SMc00886 0.36 -0.1
899,933 + SMc00886 0.37 -0.2
899,933 + SMc00886 0.37 -0.6
899,934 - SMc00886 0.37 +0.2
899,934 - SMc00886 0.37 +0.3
899,934 - SMc00886 0.37 +0.0
899,967 + SMc00886 0.39 +0.7
899,967 + SMc00886 0.39 +0.6

Or see this region's nucleotide sequence