Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2371 and SMa5034 are separated by 94 nucleotides SMa5034 and SMa2373 are separated by 92 nucleotides SMa2373 and SMa2375 are separated by 65 nucleotides
SMa2371: SMa2371 - cytosine deaminase, at 1,337,702 to 1,339,000
SMa2371
SMa5034: SMa5034 - hypothetical protein, at 1,339,095 to 1,339,781
SMa5034
SMa2373: SMa2373 - TRm2011-2a transposase, at 1,339,874 to 1,340,281
SMa2373
SMa2375: SMa2375 - TRm2011-2b transposase, at 1,340,347 to 1,340,820
SMa2375
Position (kb)
1339
1340 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1338.126 kb on - strand, within SMa2371 at 1338.164 kb on + strand, within SMa2371 at 1338.165 kb on - strand, within SMa2371 at 1338.165 kb on - strand, within SMa2371 at 1338.454 kb on + strand, within SMa2371 at 1338.455 kb on + strand, within SMa2371 at 1338.455 kb on + strand, within SMa2371 at 1338.455 kb on + strand, within SMa2371 at 1338.456 kb on - strand, within SMa2371 at 1338.456 kb on - strand, within SMa2371 at 1338.456 kb on - strand, within SMa2371 at 1338.456 kb on - strand, within SMa2371 at 1338.456 kb on - strand, within SMa2371 at 1338.456 kb on - strand, within SMa2371 at 1338.458 kb on + strand, within SMa2371 at 1338.459 kb on - strand, within SMa2371 at 1338.459 kb on - strand, within SMa2371 at 1338.785 kb on + strand, within SMa2371 at 1338.786 kb on - strand, within SMa2371 at 1338.974 kb on + strand at 1338.974 kb on + strand at 1338.975 kb on - strand at 1339.067 kb on - strand at 1339.067 kb on - strand at 1339.067 kb on - strand at 1339.068 kb on + strand at 1339.068 kb on + strand at 1339.069 kb on - strand at 1339.126 kb on + strand at 1339.194 kb on + strand, within SMa5034 at 1339.194 kb on + strand, within SMa5034 at 1339.234 kb on + strand, within SMa5034 at 1339.234 kb on + strand at 1339.235 kb on - strand, within SMa5034 at 1339.235 kb on - strand, within SMa5034 at 1339.378 kb on + strand, within SMa5034 at 1339.378 kb on + strand, within SMa5034 at 1339.425 kb on + strand, within SMa5034 at 1339.426 kb on - strand, within SMa5034 at 1339.546 kb on + strand, within SMa5034 at 1339.758 kb on - strand at 1339.767 kb on + strand at 1339.768 kb on - strand at 1339.768 kb on - strand at 1339.780 kb on - strand at 1339.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 1,338,126 - SMa2371 0.33 -1.3 1,338,164 + SMa2371 0.36 -0.2 1,338,165 - SMa2371 0.36 +1.0 1,338,165 - SMa2371 0.36 -0.1 1,338,454 + SMa2371 0.58 -0.1 1,338,455 + SMa2371 0.58 -0.3 1,338,455 + SMa2371 0.58 -0.4 1,338,455 + SMa2371 0.58 -1.7 1,338,456 - SMa2371 0.58 -2.2 1,338,456 - SMa2371 0.58 +3.0 1,338,456 - SMa2371 0.58 +0.3 1,338,456 - SMa2371 0.58 -0.1 1,338,456 - SMa2371 0.58 -0.3 1,338,456 - SMa2371 0.58 -0.7 1,338,458 + SMa2371 0.58 +0.1 1,338,459 - SMa2371 0.58 +0.5 1,338,459 - SMa2371 0.58 -0.1 1,338,785 + SMa2371 0.83 -0.0 1,338,786 - SMa2371 0.83 -0.4 1,338,974 + -1.1 1,338,974 + -0.2 1,338,975 - -0.1 1,339,067 - +0.0 1,339,067 - -0.3 1,339,067 - +0.6 1,339,068 + +0.4 1,339,068 + -0.4 1,339,069 - -0.0 1,339,126 + +0.9 1,339,194 + SMa5034 0.14 +0.3 1,339,194 + SMa5034 0.14 +0.1 1,339,234 + SMa5034 0.20 +0.4 1,339,234 + +1.0 1,339,235 - SMa5034 0.20 +0.2 1,339,235 - SMa5034 0.20 -0.3 1,339,378 + SMa5034 0.41 +0.5 1,339,378 + SMa5034 0.41 +0.5 1,339,425 + SMa5034 0.48 +0.9 1,339,426 - SMa5034 0.48 +1.0 1,339,546 + SMa5034 0.66 +1.1 1,339,758 - +0.4 1,339,767 + +2.0 1,339,768 - -0.1 1,339,768 - +0.5 1,339,780 - +0.8 1,339,780 - +0.4
Or see this region's nucleotide sequence