Strain Fitness in Sinorhizobium meliloti 1021 around SMa2221

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2217 and SMa2219 are separated by 2 nucleotidesSMa2219 and SMa2221 overlap by 4 nucleotidesSMa2221 and SMa2223 overlap by 4 nucleotides SMa2217: SMa2217 - decarboxylase, at 1,241,610 to 1,242,935 SMa2217 SMa2219: SMa2219 - decarboxylase, at 1,242,938 to 1,243,531 SMa2219 SMa2221: SMa2221 - hypothetical protein, at 1,243,528 to 1,244,241 SMa2221 SMa2223: SMa2223 - oxidoreductase, at 1,244,238 to 1,245,344 SMa2223 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -2 -1 0 1at 1242.681 kb on - strand, within SMa2217at 1242.709 kb on - strand, within SMa2217at 1242.765 kb on - strand, within SMa2217at 1243.105 kb on - strand, within SMa2219at 1243.342 kb on + strand, within SMa2219at 1243.343 kb on - strand, within SMa2219at 1243.343 kb on - strand, within SMa2219at 1243.397 kb on + strand, within SMa2219at 1243.397 kb on + strand, within SMa2219at 1243.397 kb on + strand, within SMa2219at 1243.543 kb on - strandat 1243.756 kb on - strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1244.058 kb on - strand, within SMa2221at 1244.138 kb on - strand, within SMa2221at 1244.195 kb on + strandat 1244.211 kb on - strandat 1244.327 kb on + strandat 1244.421 kb on + strand, within SMa2223at 1244.421 kb on + strand, within SMa2223at 1244.421 kb on + strand, within SMa2223at 1244.501 kb on - strand, within SMa2223at 1244.570 kb on + strand, within SMa2223at 1244.645 kb on - strand, within SMa2223at 1244.654 kb on - strand, within SMa2223at 1244.767 kb on + strand, within SMa2223at 1245.182 kb on + strand, within SMa2223at 1245.182 kb on + strand, within SMa2223at 1245.186 kb on + strand, within SMa2223at 1245.186 kb on + strand, within SMa2223at 1245.186 kb on + strand, within SMa2223at 1245.187 kb on - strand, within SMa2223at 1245.187 kb on - strand, within SMa2223at 1245.216 kb on + strand, within SMa2223

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,242,681 - SMa2217 0.81 +0.6
1,242,709 - SMa2217 0.83 -0.1
1,242,765 - SMa2217 0.87 +0.6
1,243,105 - SMa2219 0.28 -1.8
1,243,342 + SMa2219 0.68 -0.6
1,243,343 - SMa2219 0.68 -1.1
1,243,343 - SMa2219 0.68 +0.3
1,243,397 + SMa2219 0.77 +0.9
1,243,397 + SMa2219 0.77 -0.6
1,243,397 + SMa2219 0.77 -0.3
1,243,543 - +0.1
1,243,756 - SMa2221 0.32 +0.2
1,243,871 + SMa2221 0.48 -0.7
1,243,871 + SMa2221 0.48 +0.4
1,243,871 + SMa2221 0.48 -0.0
1,243,871 + SMa2221 0.48 -1.2
1,243,871 + SMa2221 0.48 -0.1
1,243,872 - SMa2221 0.48 +0.2
1,243,872 - SMa2221 0.48 +0.3
1,243,872 - SMa2221 0.48 +0.4
1,243,872 - SMa2221 0.48 +0.4
1,243,872 - SMa2221 0.48 +0.7
1,243,872 - SMa2221 0.48 +0.5
1,243,872 - SMa2221 0.48 +0.5
1,243,872 - SMa2221 0.48 +1.0
1,243,872 - SMa2221 0.48 +1.3
1,244,058 - SMa2221 0.74 +0.9
1,244,138 - SMa2221 0.85 +1.4
1,244,195 + +0.2
1,244,211 - -0.7
1,244,327 + -0.2
1,244,421 + SMa2223 0.17 +0.6
1,244,421 + SMa2223 0.17 -0.2
1,244,421 + SMa2223 0.17 +0.7
1,244,501 - SMa2223 0.24 -1.5
1,244,570 + SMa2223 0.30 -0.6
1,244,645 - SMa2223 0.37 +0.4
1,244,654 - SMa2223 0.38 +0.8
1,244,767 + SMa2223 0.48 -2.7
1,245,182 + SMa2223 0.85 +0.1
1,245,182 + SMa2223 0.85 -1.7
1,245,186 + SMa2223 0.86 -0.2
1,245,186 + SMa2223 0.86 +0.4
1,245,186 + SMa2223 0.86 +0.4
1,245,187 - SMa2223 0.86 -0.2
1,245,187 - SMa2223 0.86 -2.1
1,245,216 + SMa2223 0.88 +0.5

Or see this region's nucleotide sequence