Strain Fitness in Sinorhizobium meliloti 1021 around SMa1797

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1797 and SMa1798 are separated by 615 nucleotides SMa1797: SMa1797 - hypothetical protein, at 1,018,587 to 1,018,913 SMa1797 SMa1798: SMa1798 - Kup2 potassium uptake protein, at 1,019,529 to 1,021,430 SMa1798 Position (kb) 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1017.891 kb on + strandat 1017.961 kb on + strandat 1017.962 kb on - strandat 1017.962 kb on - strandat 1017.963 kb on + strandat 1017.964 kb on - strandat 1017.964 kb on - strandat 1018.004 kb on - strandat 1018.024 kb on + strandat 1018.025 kb on - strandat 1018.025 kb on - strandat 1018.027 kb on + strandat 1018.249 kb on - strandat 1018.345 kb on + strandat 1018.345 kb on + strandat 1018.346 kb on - strandat 1018.346 kb on - strandat 1018.376 kb on + strandat 1018.436 kb on + strandat 1018.448 kb on - strandat 1018.473 kb on + strandat 1018.473 kb on + strandat 1018.474 kb on - strandat 1018.585 kb on - strandat 1018.620 kb on + strand, within SMa1797at 1018.620 kb on + strand, within SMa1797at 1018.640 kb on + strand, within SMa1797at 1018.641 kb on - strand, within SMa1797at 1018.641 kb on - strand, within SMa1797at 1018.643 kb on + strand, within SMa1797at 1018.753 kb on + strand, within SMa1797at 1018.754 kb on - strand, within SMa1797at 1018.841 kb on + strand, within SMa1797at 1018.841 kb on + strand, within SMa1797at 1018.925 kb on + strandat 1018.925 kb on + strandat 1019.131 kb on - strandat 1019.169 kb on - strandat 1019.190 kb on + strandat 1019.190 kb on + strandat 1019.190 kb on + strandat 1019.191 kb on - strandat 1019.214 kb on + strandat 1019.214 kb on + strandat 1019.214 kb on + strandat 1019.215 kb on - strandat 1019.215 kb on - strandat 1019.382 kb on - strandat 1019.405 kb on - strandat 1019.414 kb on + strandat 1019.528 kb on + strandat 1019.528 kb on + strandat 1019.529 kb on - strandat 1019.529 kb on - strandat 1019.616 kb on + strandat 1019.757 kb on + strand, within SMa1798

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,017,891 + -0.3
1,017,961 + +4.3
1,017,962 - +0.9
1,017,962 - +0.0
1,017,963 + -0.3
1,017,964 - +0.9
1,017,964 - -1.0
1,018,004 - +0.3
1,018,024 + +1.5
1,018,025 - -1.3
1,018,025 - -0.1
1,018,027 + +0.1
1,018,249 - +0.5
1,018,345 + +0.2
1,018,345 + -0.9
1,018,346 - +0.4
1,018,346 - +0.2
1,018,376 + +0.2
1,018,436 + -0.0
1,018,448 - -1.3
1,018,473 + -0.0
1,018,473 + +0.1
1,018,474 - +1.0
1,018,585 - -1.1
1,018,620 + SMa1797 0.10 +0.3
1,018,620 + SMa1797 0.10 -0.3
1,018,640 + SMa1797 0.16 +0.1
1,018,641 - SMa1797 0.17 -0.5
1,018,641 - SMa1797 0.17 +1.0
1,018,643 + SMa1797 0.17 +0.3
1,018,753 + SMa1797 0.51 +3.1
1,018,754 - SMa1797 0.51 -1.0
1,018,841 + SMa1797 0.78 -0.3
1,018,841 + SMa1797 0.78 +2.3
1,018,925 + -1.8
1,018,925 + -1.0
1,019,131 - -0.0
1,019,169 - -0.1
1,019,190 + -0.7
1,019,190 + +0.7
1,019,190 + -1.1
1,019,191 - +0.4
1,019,214 + -0.6
1,019,214 + -0.5
1,019,214 + +0.8
1,019,215 - -1.2
1,019,215 - -0.1
1,019,382 - -0.6
1,019,405 - +0.0
1,019,414 + -0.6
1,019,528 + -0.0
1,019,528 + +0.4
1,019,529 - +0.9
1,019,529 - +0.8
1,019,616 + +0.1
1,019,757 + SMa1798 0.12 -0.8

Or see this region's nucleotide sequence