Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1717 and SMa1718 are separated by 47 nucleotides SMa1718 and SMa1720 are separated by 116 nucleotides
SMa1717: SMa1717 - Permease, at 967,265 to 968,665
SMa1717
SMa1718: SMa1718 - AdeC4 adenine deaminase, at 968,713 to 970,515
SMa1718
SMa1720: SMa1720 - LysR family transcriptional regulator, at 970,632 to 971,576
SMa1720
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 967.839 kb on + strand, within SMa1717 at 968.036 kb on + strand, within SMa1717 at 968.036 kb on + strand, within SMa1717 at 968.048 kb on + strand, within SMa1717 at 968.125 kb on + strand, within SMa1717 at 968.126 kb on - strand, within SMa1717 at 968.256 kb on - strand, within SMa1717 at 968.256 kb on - strand, within SMa1717 at 968.266 kb on + strand, within SMa1717 at 968.267 kb on - strand, within SMa1717 at 968.344 kb on - strand, within SMa1717 at 968.511 kb on + strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.588 kb on + strand at 968.589 kb on - strand at 968.659 kb on - strand at 968.665 kb on + strand at 968.665 kb on + strand at 968.665 kb on + strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.714 kb on + strand at 968.816 kb on + strand at 968.853 kb on - strand at 968.853 kb on - strand at 968.994 kb on + strand, within SMa1718 at 968.994 kb on + strand, within SMa1718 at 969.040 kb on - strand, within SMa1718 at 969.197 kb on + strand, within SMa1718 at 969.198 kb on - strand, within SMa1718 at 969.198 kb on - strand, within SMa1718 at 969.369 kb on + strand, within SMa1718 at 969.424 kb on + strand, within SMa1718 at 969.425 kb on - strand, within SMa1718 at 969.429 kb on + strand, within SMa1718 at 969.676 kb on + strand, within SMa1718 at 969.833 kb on + strand, within SMa1718 at 969.943 kb on + strand, within SMa1718 at 970.029 kb on + strand, within SMa1718 at 970.029 kb on + strand, within SMa1718 at 970.064 kb on - strand, within SMa1718 at 970.085 kb on + strand, within SMa1718 at 970.085 kb on + strand, within SMa1718 at 970.086 kb on - strand, within SMa1718 at 970.308 kb on - strand, within SMa1718 at 970.308 kb on - strand, within SMa1718 at 970.308 kb on - strand, within SMa1718 at 970.326 kb on + strand, within SMa1718 at 970.349 kb on + strand at 970.349 kb on + strand at 970.350 kb on - strand at 970.350 kb on - strand at 970.359 kb on + strand at 970.409 kb on + strand at 970.410 kb on - strand at 970.541 kb on + strand at 970.666 kb on + strand at 970.728 kb on - strand, within SMa1720 at 970.778 kb on - strand, within SMa1720 at 970.890 kb on - strand, within SMa1720 at 970.963 kb on - strand, within SMa1720 at 970.963 kb on - strand, within SMa1720 at 970.980 kb on + strand, within SMa1720 at 970.981 kb on - strand, within SMa1720 at 971.061 kb on - strand, within SMa1720 at 971.095 kb on - strand, within SMa1720 at 971.134 kb on - strand, within SMa1720 at 971.148 kb on + strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.451 kb on + strand, within SMa1720 at 971.451 kb on + strand, within SMa1720 at 971.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 967,839 + SMa1717 0.41 -0.8 968,036 + SMa1717 0.55 +0.2 968,036 + SMa1717 0.55 +0.3 968,048 + SMa1717 0.56 -0.7 968,125 + SMa1717 0.61 -0.0 968,126 - SMa1717 0.61 +0.1 968,256 - SMa1717 0.71 -0.4 968,256 - SMa1717 0.71 -0.2 968,266 + SMa1717 0.71 +0.4 968,267 - SMa1717 0.72 -0.7 968,344 - SMa1717 0.77 +1.2 968,511 + SMa1717 0.89 +0.8 968,512 - SMa1717 0.89 +0.1 968,512 - SMa1717 0.89 +0.9 968,512 - SMa1717 0.89 -0.3 968,512 - SMa1717 0.89 -1.2 968,588 + +0.0 968,589 - +0.3 968,659 - -0.1 968,665 + -0.7 968,665 + +1.8 968,665 + +0.4 968,666 - +0.7 968,666 - +0.6 968,666 - +1.5 968,666 - -0.1 968,666 - -0.2 968,714 + +0.4 968,816 + -2.0 968,853 - +0.3 968,853 - +0.2 968,994 + SMa1718 0.16 +0.3 968,994 + SMa1718 0.16 -0.1 969,040 - SMa1718 0.18 +0.3 969,197 + SMa1718 0.27 -1.2 969,198 - SMa1718 0.27 -0.3 969,198 - SMa1718 0.27 -0.2 969,369 + SMa1718 0.36 +0.1 969,424 + SMa1718 0.39 -0.4 969,425 - SMa1718 0.39 -1.0 969,429 + SMa1718 0.40 -1.2 969,676 + SMa1718 0.53 +0.3 969,833 + SMa1718 0.62 -0.9 969,943 + SMa1718 0.68 -0.8 970,029 + SMa1718 0.73 +0.2 970,029 + SMa1718 0.73 -0.5 970,064 - SMa1718 0.75 +0.4 970,085 + SMa1718 0.76 +1.3 970,085 + SMa1718 0.76 -0.6 970,086 - SMa1718 0.76 +0.5 970,308 - SMa1718 0.88 -2.5 970,308 - SMa1718 0.88 -0.7 970,308 - SMa1718 0.88 -0.6 970,326 + SMa1718 0.89 -0.6 970,349 + +0.2 970,349 + -0.2 970,350 - -2.3 970,350 - +0.3 970,359 + +0.1 970,409 + -0.1 970,410 - -1.5 970,541 + +0.6 970,666 + -1.4 970,728 - SMa1720 0.10 -0.2 970,778 - SMa1720 0.15 +0.4 970,890 - SMa1720 0.27 +0.6 970,963 - SMa1720 0.35 -0.7 970,963 - SMa1720 0.35 +2.3 970,980 + SMa1720 0.37 +1.0 970,981 - SMa1720 0.37 -1.5 971,061 - SMa1720 0.45 +0.8 971,095 - SMa1720 0.49 -0.2 971,134 - SMa1720 0.53 -0.2 971,148 + SMa1720 0.55 -0.3 971,448 - SMa1720 0.86 -0.1 971,448 - SMa1720 0.86 -0.7 971,448 - SMa1720 0.86 -0.3 971,451 + SMa1720 0.87 -0.4 971,451 + SMa1720 0.87 -1.0 971,515 - -0.8
Or see this region's nucleotide sequence