Strain Fitness in Sinorhizobium meliloti 1021 around SMa1684

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1683 and SMa1684 are separated by 336 nucleotidesSMa1684 and SMa1686 overlap by 8 nucleotidesSMa1686 and SMa1688 are separated by 81 nucleotides SMa1683: SMa1683 - arylsulfatase, at 946,966 to 948,633 SMa1683 SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853 SMa1684 SMa1686: SMa1686 - Two-component response regulator, at 950,846 to 951,487 SMa1686 SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985 SMa1688 Position (kb) 948 949 950 951Strain fitness (log2 ratio) -2 -1 0 1at 947.992 kb on - strand, within SMa1683at 947.992 kb on - strand, within SMa1683at 947.999 kb on + strand, within SMa1683at 948.128 kb on + strand, within SMa1683at 948.128 kb on + strand, within SMa1683at 948.129 kb on - strand, within SMa1683at 948.129 kb on - strand, within SMa1683at 948.129 kb on - strand, within SMa1683at 948.134 kb on + strand, within SMa1683at 948.134 kb on + strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.150 kb on - strand, within SMa1683at 948.162 kb on - strand, within SMa1683at 948.201 kb on - strand, within SMa1683at 948.236 kb on + strand, within SMa1683at 948.237 kb on - strand, within SMa1683at 948.237 kb on - strand, within SMa1683at 948.237 kb on - strand, within SMa1683at 948.398 kb on + strand, within SMa1683at 948.581 kb on - strandat 948.737 kb on - strandat 948.750 kb on + strandat 948.751 kb on - strandat 948.863 kb on + strandat 948.919 kb on - strandat 948.938 kb on + strandat 948.938 kb on + strandat 949.109 kb on + strandat 949.115 kb on - strandat 949.115 kb on - strandat 949.133 kb on + strandat 949.270 kb on + strand, within SMa1684at 949.271 kb on - strand, within SMa1684at 949.271 kb on - strand, within SMa1684at 949.285 kb on + strand, within SMa1684at 949.286 kb on - strand, within SMa1684at 949.286 kb on - strand, within SMa1684at 949.328 kb on + strand, within SMa1684at 949.382 kb on + strand, within SMa1684at 949.466 kb on + strand, within SMa1684at 949.466 kb on + strand, within SMa1684at 949.467 kb on - strand, within SMa1684at 949.601 kb on - strand, within SMa1684at 949.774 kb on + strand, within SMa1684at 949.775 kb on - strand, within SMa1684at 949.793 kb on - strand, within SMa1684at 949.793 kb on - strand, within SMa1684at 949.918 kb on + strand, within SMa1684at 949.919 kb on - strand, within SMa1684at 949.919 kb on - strand, within SMa1684at 950.020 kb on + strand, within SMa1684at 950.020 kb on + strand, within SMa1684at 950.021 kb on - strand, within SMa1684at 950.311 kb on - strand, within SMa1684at 950.466 kb on - strand, within SMa1684at 950.466 kb on - strand, within SMa1684at 950.466 kb on - strand, within SMa1684at 950.466 kb on - strand, within SMa1684at 950.707 kb on + strandat 950.708 kb on - strandat 950.708 kb on - strandat 950.770 kb on + strandat 950.771 kb on - strandat 950.877 kb on + strandat 950.878 kb on - strandat 950.878 kb on - strandat 950.948 kb on + strand, within SMa1686at 950.949 kb on - strand, within SMa1686at 950.949 kb on - strand, within SMa1686at 951.245 kb on - strand, within SMa1686at 951.297 kb on + strand, within SMa1686at 951.297 kb on + strand, within SMa1686at 951.328 kb on + strand, within SMa1686at 951.489 kb on + strandat 951.489 kb on + strandat 951.490 kb on - strandat 951.490 kb on - strandat 951.490 kb on - strandat 951.543 kb on + strandat 951.621 kb on + strand, within SMa1688at 951.622 kb on - strand, within SMa1688at 951.742 kb on - strand, within SMa1688at 951.777 kb on + strand, within SMa1688at 951.777 kb on + strand, within SMa1688

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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947,992 - SMa1683 0.62 +1.3
947,992 - SMa1683 0.62 +0.2
947,999 + SMa1683 0.62 -0.0
948,128 + SMa1683 0.70 -0.2
948,128 + SMa1683 0.70 -2.4
948,129 - SMa1683 0.70 +0.4
948,129 - SMa1683 0.70 -0.4
948,129 - SMa1683 0.70 -0.9
948,134 + SMa1683 0.70 +0.8
948,134 + SMa1683 0.70 +0.9
948,135 - SMa1683 0.70 +0.3
948,135 - SMa1683 0.70 -0.5
948,135 - SMa1683 0.70 -0.1
948,135 - SMa1683 0.70 -0.5
948,150 - SMa1683 0.71 -0.6
948,162 - SMa1683 0.72 +1.2
948,201 - SMa1683 0.74 -0.6
948,236 + SMa1683 0.76 -1.5
948,237 - SMa1683 0.76 -0.6
948,237 - SMa1683 0.76 -0.7
948,237 - SMa1683 0.76 -0.3
948,398 + SMa1683 0.86 +0.3
948,581 - +1.5
948,737 - +0.6
948,750 + +0.2
948,751 - -1.5
948,863 + -0.3
948,919 - +0.1
948,938 + -1.2
948,938 + +0.2
949,109 + -0.9
949,115 - -0.1
949,115 - -1.9
949,133 + -0.7
949,270 + SMa1684 0.16 -0.6
949,271 - SMa1684 0.16 +1.1
949,271 - SMa1684 0.16 +0.1
949,285 + SMa1684 0.17 -0.2
949,286 - SMa1684 0.17 -0.4
949,286 - SMa1684 0.17 +0.0
949,328 + SMa1684 0.19 -0.1
949,382 + SMa1684 0.22 -1.9
949,466 + SMa1684 0.26 -0.3
949,466 + SMa1684 0.26 -0.7
949,467 - SMa1684 0.26 -0.3
949,601 - SMa1684 0.33 -1.3
949,774 + SMa1684 0.43 -1.1
949,775 - SMa1684 0.43 +0.9
949,793 - SMa1684 0.44 -1.0
949,793 - SMa1684 0.44 -0.0
949,918 + SMa1684 0.50 +0.6
949,919 - SMa1684 0.50 -1.7
949,919 - SMa1684 0.50 -1.0
950,020 + SMa1684 0.56 +0.1
950,020 + SMa1684 0.56 -0.2
950,021 - SMa1684 0.56 -0.4
950,311 - SMa1684 0.71 -0.1
950,466 - SMa1684 0.79 +0.3
950,466 - SMa1684 0.79 +0.8
950,466 - SMa1684 0.79 -1.3
950,466 - SMa1684 0.79 -0.1
950,707 + +1.0
950,708 - -1.7
950,708 - -0.3
950,770 + -2.6
950,771 - +1.5
950,877 + -1.0
950,878 - -1.7
950,878 - +1.2
950,948 + SMa1686 0.16 -1.5
950,949 - SMa1686 0.16 -1.2
950,949 - SMa1686 0.16 +0.1
951,245 - SMa1686 0.62 -1.0
951,297 + SMa1686 0.70 +0.5
951,297 + SMa1686 0.70 -0.8
951,328 + SMa1686 0.75 -0.8
951,489 + -0.8
951,489 + -0.4
951,490 - -0.2
951,490 - -0.0
951,490 - +0.7
951,543 + -0.5
951,621 + SMa1688 0.12 -0.7
951,622 - SMa1688 0.13 -1.1
951,742 - SMa1688 0.41 -0.4
951,777 + SMa1688 0.50 -0.8
951,777 + SMa1688 0.50 -1.1

Or see this region's nucleotide sequence