Strain Fitness in Sinorhizobium meliloti 1021 around SMa1500

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1495 and SMa1497 are separated by 201 nucleotidesSMa1497 and SMa1500 are separated by 10 nucleotidesSMa1500 and SMa1501 are separated by 24 nucleotidesSMa1501 and SMa1503 are separated by 30 nucleotides SMa1495: SMa1495 - aminotransferase, at 824,592 to 825,704 SMa1495 SMa1497: SMa1497 - Gst12 glutathione-S-transferase, at 825,906 to 826,553 SMa1497 SMa1500: SMa1500 - oxidoreductase/oxygenase, at 826,564 to 828,330 SMa1500 SMa1501: SMa1501 - hypothetical protein, at 828,355 to 829,269 SMa1501 SMa1503: SMa1503 - hypothetical protein, at 829,300 to 830,166 SMa1503 Position (kb) 826 827 828 829Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 825.873 kb on - strandat 826.155 kb on - strand, within SMa1497at 826.155 kb on - strand, within SMa1497at 826.193 kb on - strand, within SMa1497at 826.193 kb on - strand, within SMa1497at 826.322 kb on - strand, within SMa1497at 826.322 kb on - strand, within SMa1497at 826.322 kb on - strand, within SMa1497at 826.336 kb on + strand, within SMa1497at 826.337 kb on - strand, within SMa1497at 826.475 kb on - strand, within SMa1497at 826.534 kb on + strandat 826.541 kb on - strandat 826.652 kb on + strandat 826.652 kb on + strandat 826.653 kb on - strandat 826.789 kb on - strand, within SMa1500at 826.789 kb on - strand, within SMa1500at 826.789 kb on - strand, within SMa1500at 826.789 kb on - strand, within SMa1500at 826.789 kb on - strand, within SMa1500at 826.841 kb on - strand, within SMa1500at 826.841 kb on - strand, within SMa1500at 826.845 kb on + strand, within SMa1500at 826.846 kb on - strand, within SMa1500at 826.929 kb on + strand, within SMa1500at 826.929 kb on + strand, within SMa1500at 826.950 kb on - strand, within SMa1500at 826.995 kb on + strand, within SMa1500at 827.100 kb on - strand, within SMa1500at 827.130 kb on + strand, within SMa1500at 827.130 kb on + strand, within SMa1500at 827.130 kb on + strand, within SMa1500at 827.130 kb on + strand, within SMa1500at 827.131 kb on - strand, within SMa1500at 827.131 kb on - strand, within SMa1500at 827.324 kb on + strand, within SMa1500at 827.324 kb on + strand, within SMa1500at 827.325 kb on - strand, within SMa1500at 827.360 kb on + strand, within SMa1500at 827.360 kb on + strand, within SMa1500at 827.637 kb on - strand, within SMa1500at 827.823 kb on + strand, within SMa1500at 827.956 kb on - strand, within SMa1500at 828.006 kb on - strand, within SMa1500at 828.006 kb on - strand, within SMa1500at 828.028 kb on - strand, within SMa1500at 828.028 kb on - strand, within SMa1500at 828.076 kb on - strand, within SMa1500at 828.077 kb on + strand, within SMa1500at 828.077 kb on + strand, within SMa1500at 828.077 kb on + strandat 828.078 kb on - strand, within SMa1500at 828.078 kb on - strand, within SMa1500at 828.078 kb on - strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.081 kb on + strand, within SMa1500at 828.082 kb on - strand, within SMa1500at 828.082 kb on - strand, within SMa1500at 828.104 kb on + strand, within SMa1500at 828.104 kb on + strand, within SMa1500at 828.105 kb on - strand, within SMa1500at 828.119 kb on + strand, within SMa1500at 828.199 kb on - strandat 828.207 kb on - strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.380 kb on + strandat 828.413 kb on + strandat 828.582 kb on + strand, within SMa1501at 828.582 kb on + strand, within SMa1501at 828.583 kb on - strand, within SMa1501at 828.583 kb on - strand, within SMa1501at 828.583 kb on - strand, within SMa1501at 828.669 kb on - strand, within SMa1501at 828.684 kb on - strand, within SMa1501at 828.701 kb on + strand, within SMa1501at 828.701 kb on + strand, within SMa1501at 828.701 kb on + strand, within SMa1501at 828.702 kb on - strand, within SMa1501at 828.702 kb on - strand, within SMa1501at 828.702 kb on - strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.707 kb on + strand, within SMa1501at 828.813 kb on - strand, within SMa1501at 828.813 kb on - strand, within SMa1501at 828.863 kb on + strand, within SMa1501at 828.965 kb on + strand, within SMa1501at 829.018 kb on - strand, within SMa1501at 829.018 kb on - strand, within SMa1501at 829.060 kb on - strand, within SMa1501at 829.060 kb on - strand, within SMa1501at 829.060 kb on - strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.139 kb on + strand, within SMa1501at 829.140 kb on - strand, within SMa1501at 829.140 kb on - strand, within SMa1501at 829.140 kb on - strand, within SMa1501at 829.292 kb on + strandat 829.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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825,873 - +0.1
826,155 - SMa1497 0.38 -1.0
826,155 - SMa1497 0.38 +0.3
826,193 - SMa1497 0.44 +0.6
826,193 - SMa1497 0.44 -0.7
826,322 - SMa1497 0.64 -0.1
826,322 - SMa1497 0.64 -0.5
826,322 - SMa1497 0.64 +0.8
826,336 + SMa1497 0.66 -0.4
826,337 - SMa1497 0.67 +0.3
826,475 - SMa1497 0.88 +2.1
826,534 + +1.9
826,541 - -0.4
826,652 + +0.5
826,652 + +1.2
826,653 - +0.6
826,789 - SMa1500 0.13 -0.0
826,789 - SMa1500 0.13 +1.2
826,789 - SMa1500 0.13 -0.3
826,789 - SMa1500 0.13 +0.3
826,789 - SMa1500 0.13 +0.2
826,841 - SMa1500 0.16 +0.1
826,841 - SMa1500 0.16 -0.0
826,845 + SMa1500 0.16 +1.7
826,846 - SMa1500 0.16 +0.4
826,929 + SMa1500 0.21 +4.2
826,929 + SMa1500 0.21 +1.7
826,950 - SMa1500 0.22 +0.1
826,995 + SMa1500 0.24 +1.1
827,100 - SMa1500 0.30 -0.3
827,130 + SMa1500 0.32 -0.1
827,130 + SMa1500 0.32 +0.1
827,130 + SMa1500 0.32 +0.3
827,130 + SMa1500 0.32 -0.3
827,131 - SMa1500 0.32 -0.0
827,131 - SMa1500 0.32 +0.4
827,324 + SMa1500 0.43 +0.4
827,324 + SMa1500 0.43 -0.8
827,325 - SMa1500 0.43 +0.8
827,360 + SMa1500 0.45 -0.8
827,360 + SMa1500 0.45 +0.9
827,637 - SMa1500 0.61 -0.2
827,823 + SMa1500 0.71 +0.3
827,956 - SMa1500 0.79 +2.0
828,006 - SMa1500 0.82 +0.3
828,006 - SMa1500 0.82 +1.7
828,028 - SMa1500 0.83 -2.0
828,028 - SMa1500 0.83 +0.7
828,076 - SMa1500 0.86 -0.1
828,077 + SMa1500 0.86 -1.3
828,077 + SMa1500 0.86 -0.4
828,077 + -1.1
828,078 - SMa1500 0.86 -0.6
828,078 - SMa1500 0.86 +0.9
828,078 - SMa1500 0.86 +1.2
828,081 + SMa1500 0.86 -1.8
828,081 + SMa1500 0.86 -0.5
828,081 + SMa1500 0.86 +0.7
828,081 + SMa1500 0.86 -0.3
828,082 - SMa1500 0.86 +0.4
828,082 - SMa1500 0.86 -1.3
828,104 + SMa1500 0.87 -0.5
828,104 + SMa1500 0.87 -0.9
828,105 - SMa1500 0.87 +0.2
828,119 + SMa1500 0.88 -2.1
828,199 - +0.7
828,207 - -1.4
828,284 + -0.3
828,284 + -0.3
828,284 + -0.4
828,284 + +0.6
828,285 - +0.4
828,285 - +0.3
828,285 - +0.5
828,285 - +0.0
828,380 + +0.9
828,413 + -0.0
828,582 + SMa1501 0.25 -0.6
828,582 + SMa1501 0.25 -0.4
828,583 - SMa1501 0.25 -0.6
828,583 - SMa1501 0.25 +1.6
828,583 - SMa1501 0.25 +0.3
828,669 - SMa1501 0.34 -0.5
828,684 - SMa1501 0.36 +1.0
828,701 + SMa1501 0.38 +0.3
828,701 + SMa1501 0.38 +0.5
828,701 + SMa1501 0.38 +0.9
828,702 - SMa1501 0.38 +0.3
828,702 - SMa1501 0.38 -0.2
828,702 - SMa1501 0.38 +0.6
828,707 + SMa1501 0.38 +0.5
828,707 + SMa1501 0.38 +0.3
828,707 + SMa1501 0.38 -0.3
828,707 + SMa1501 0.38 +0.1
828,813 - SMa1501 0.50 +0.3
828,813 - SMa1501 0.50 +1.0
828,863 + SMa1501 0.56 -2.2
828,965 + SMa1501 0.67 -0.2
829,018 - SMa1501 0.72 -0.4
829,018 - SMa1501 0.72 +1.3
829,060 - SMa1501 0.77 +0.5
829,060 - SMa1501 0.77 -2.8
829,060 - SMa1501 0.77 -0.3
829,139 + SMa1501 0.86 -2.1
829,139 + SMa1501 0.86 +0.1
829,139 + SMa1501 0.86 -0.2
829,139 + SMa1501 0.86 +0.2
829,139 + SMa1501 0.86 +0.3
829,139 + SMa1501 0.86 -0.4
829,140 - SMa1501 0.86 +0.4
829,140 - SMa1501 0.86 +0.6
829,140 - SMa1501 0.86 -1.7
829,292 + -0.5
829,293 - +0.5

Or see this region's nucleotide sequence