Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1389 and SMa1391 are separated by 116 nucleotides SMa1391 and SMa1394 are separated by 16 nucleotides SMa1394 and SMa1397 are separated by 1 nucleotides
SMa1389: SMa1389 - EtfA2 electron-transport flavoprotein, alpha-subunit, at 765,128 to 766,057
SMa1389
SMa1391: SMa1391 - EtfB2 electron transport flavoprotein, beta subunit, at 766,174 to 766,923
SMa1391
SMa1394: SMa1394 - hypothetical protein, at 766,940 to 767,797
SMa1394
SMa1397: SMa1397 - hypothetical protein, at 767,799 to 768,947
SMa1397
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1
2
3 at 766.886 kb on + strand at 766.915 kb on + strand at 767.160 kb on + strand, within SMa1394 at 767.160 kb on + strand, within SMa1394 at 767.161 kb on - strand, within SMa1394 at 767.166 kb on + strand, within SMa1394 at 767.167 kb on - strand, within SMa1394 at 767.229 kb on + strand, within SMa1394 at 767.229 kb on + strand, within SMa1394 at 767.230 kb on - strand, within SMa1394 at 767.245 kb on + strand, within SMa1394 at 767.325 kb on + strand, within SMa1394 at 767.468 kb on + strand, within SMa1394 at 767.809 kb on + strand at 767.995 kb on + strand, within SMa1397 at 767.995 kb on + strand, within SMa1397 at 767.996 kb on - strand, within SMa1397 at 768.068 kb on + strand, within SMa1397 at 768.068 kb on + strand, within SMa1397 at 768.185 kb on - strand, within SMa1397 at 768.205 kb on + strand, within SMa1397 at 768.206 kb on - strand, within SMa1397 at 768.206 kb on - strand, within SMa1397 at 768.239 kb on + strand, within SMa1397 at 768.276 kb on + strand, within SMa1397 at 768.439 kb on + strand, within SMa1397 at 768.451 kb on + strand, within SMa1397 at 768.547 kb on + strand, within SMa1397 at 768.548 kb on - strand, within SMa1397
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 766,886 + +0.2 766,915 + -0.2 767,160 + SMa1394 0.26 +0.3 767,160 + SMa1394 0.26 -0.2 767,161 - SMa1394 0.26 +0.7 767,166 + SMa1394 0.26 +0.7 767,167 - SMa1394 0.26 +0.2 767,229 + SMa1394 0.34 +0.2 767,229 + SMa1394 0.34 -0.0 767,230 - SMa1394 0.34 +1.8 767,245 + SMa1394 0.36 +0.4 767,325 + SMa1394 0.45 +0.0 767,468 + SMa1394 0.62 +0.3 767,809 + +0.6 767,995 + SMa1397 0.17 +0.5 767,995 + SMa1397 0.17 +0.5 767,996 - SMa1397 0.17 +0.5 768,068 + SMa1397 0.23 -1.3 768,068 + SMa1397 0.23 +1.4 768,185 - SMa1397 0.34 +0.6 768,205 + SMa1397 0.35 +1.1 768,206 - SMa1397 0.35 +0.0 768,206 - SMa1397 0.35 +0.9 768,239 + SMa1397 0.38 +0.5 768,276 + SMa1397 0.42 +0.2 768,439 + SMa1397 0.56 -0.5 768,451 + SMa1397 0.57 +0.2 768,547 + SMa1397 0.65 +3.0 768,548 - SMa1397 0.65 +0.1
Or see this region's nucleotide sequence