Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1288 and SMa1289 are separated by 177 nucleotides SMa1289 and SMa1291 overlap by 10 nucleotides SMa1291 and SMa1292 are separated by 6 nucleotides SMa1292 and SMa1294 overlap by 4 nucleotides
SMa1288: SMa1288 - Carboxylase, at 701,871 to 703,322
SMa1288
SMa1289: SMa1289 - hypothetical protein, at 703,500 to 704,006
SMa1289
SMa1291: SMa1291 - Protease, at 703,997 to 704,974
SMa1291
SMa1292: SMa1292 - Peptidase, at 704,981 to 705,916
SMa1292
SMa1294: SMa1294 - hypothetical protein, at 705,913 to 706,359
SMa1294
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.131 kb on + strand, within SMa1288 at 703.131 kb on + strand at 703.132 kb on - strand, within SMa1288 at 703.132 kb on - strand, within SMa1288 at 703.179 kb on + strand at 703.180 kb on - strand at 703.375 kb on + strand at 703.375 kb on + strand at 703.442 kb on + strand at 703.467 kb on - strand at 703.467 kb on - strand at 703.631 kb on + strand, within SMa1289 at 703.632 kb on - strand, within SMa1289 at 703.632 kb on - strand, within SMa1289 at 703.771 kb on + strand, within SMa1289 at 703.771 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.847 kb on - strand, within SMa1289 at 703.847 kb on - strand, within SMa1289 at 704.069 kb on + strand at 704.147 kb on - strand, within SMa1291 at 704.154 kb on - strand, within SMa1291 at 704.229 kb on - strand, within SMa1291 at 704.293 kb on + strand, within SMa1291 at 704.294 kb on - strand, within SMa1291 at 704.316 kb on - strand, within SMa1291 at 704.537 kb on + strand, within SMa1291 at 704.537 kb on + strand, within SMa1291 at 704.549 kb on - strand, within SMa1291 at 704.640 kb on - strand, within SMa1291 at 704.640 kb on - strand, within SMa1291 at 704.834 kb on + strand, within SMa1291 at 704.834 kb on + strand, within SMa1291 at 704.835 kb on - strand, within SMa1291 at 704.835 kb on - strand, within SMa1291 at 704.897 kb on - strand at 704.972 kb on + strand at 705.143 kb on + strand, within SMa1292 at 705.144 kb on - strand, within SMa1292 at 705.144 kb on - strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.241 kb on - strand, within SMa1292 at 705.396 kb on + strand, within SMa1292 at 705.397 kb on - strand, within SMa1292 at 705.818 kb on + strand, within SMa1292
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 703,131 + SMa1288 0.87 -0.2 703,131 + +1.8 703,132 - SMa1288 0.87 +0.4 703,132 - SMa1288 0.87 +0.3 703,179 + -0.6 703,180 - -0.5 703,375 + +0.6 703,375 + +0.7 703,442 + +0.5 703,467 - +0.5 703,467 - +0.6 703,631 + SMa1289 0.26 -0.6 703,632 - SMa1289 0.26 +0.4 703,632 - SMa1289 0.26 -0.3 703,771 + SMa1289 0.53 -0.2 703,771 + SMa1289 0.53 -0.4 703,846 + SMa1289 0.68 +0.8 703,846 + SMa1289 0.68 +2.5 703,846 + SMa1289 0.68 -0.0 703,847 - SMa1289 0.68 -0.5 703,847 - SMa1289 0.68 -1.2 704,069 + +0.3 704,147 - SMa1291 0.15 +0.9 704,154 - SMa1291 0.16 +0.9 704,229 - SMa1291 0.24 +0.7 704,293 + SMa1291 0.30 +0.8 704,294 - SMa1291 0.30 +0.6 704,316 - SMa1291 0.33 +0.4 704,537 + SMa1291 0.55 +0.4 704,537 + SMa1291 0.55 -0.8 704,549 - SMa1291 0.56 +0.2 704,640 - SMa1291 0.66 -2.1 704,640 - SMa1291 0.66 -0.3 704,834 + SMa1291 0.86 +0.6 704,834 + SMa1291 0.86 +0.6 704,835 - SMa1291 0.86 -0.7 704,835 - SMa1291 0.86 -0.0 704,897 - -0.4 704,972 + -0.8 705,143 + SMa1292 0.17 +0.5 705,144 - SMa1292 0.17 +0.6 705,144 - SMa1292 0.17 +0.9 705,240 + SMa1292 0.28 +1.3 705,240 + SMa1292 0.28 -0.9 705,240 + SMa1292 0.28 +0.2 705,241 - SMa1292 0.28 -0.9 705,396 + SMa1292 0.44 +0.0 705,397 - SMa1292 0.44 +0.4 705,818 + SMa1292 0.89 -0.8
Or see this region's nucleotide sequence