Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0796 and SMa0797 are separated by 5 nucleotides SMa0797 and SMa0799 are separated by 37 nucleotides SMa0799 and SMa0800 are separated by 92 nucleotides SMa0800 and SMa0802 are separated by 1 nucleotides
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
SMa0797: SMa0797 - hypothetical protein, at 435,497 to 435,823
SMa0797
SMa0799: SMa0799 - ABC transporter substrate-binding protein, at 435,861 to 436,871
SMa0799
SMa0800: SMa0800 - ABC transporter permease, at 436,964 to 437,839
SMa0800
SMa0802: SMa0802 - ABC transporter permease, at 437,841 to 438,641
SMa0802
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.329 kb on + strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.333 kb on + strand, within SMa0796 at 435.334 kb on - strand, within SMa0796 at 435.420 kb on + strand at 435.519 kb on - strand at 435.519 kb on - strand at 435.545 kb on - strand, within SMa0797 at 435.655 kb on + strand, within SMa0797 at 435.656 kb on - strand, within SMa0797 at 435.665 kb on + strand, within SMa0797 at 435.772 kb on + strand, within SMa0797 at 435.822 kb on - strand at 435.866 kb on + strand at 435.866 kb on + strand at 435.872 kb on - strand at 435.872 kb on - strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.906 kb on - strand at 435.906 kb on - strand at 435.906 kb on - strand at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.207 kb on - strand, within SMa0799 at 436.225 kb on - strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.329 kb on + strand, within SMa0799 at 436.330 kb on - strand, within SMa0799 at 436.381 kb on + strand, within SMa0799 at 436.443 kb on - strand, within SMa0799 at 436.517 kb on + strand, within SMa0799 at 436.657 kb on + strand, within SMa0799 at 436.968 kb on + strand at 436.969 kb on - strand at 437.000 kb on + strand at 437.056 kb on - strand, within SMa0800 at 437.101 kb on - strand, within SMa0800 at 437.142 kb on - strand, within SMa0800 at 437.142 kb on - strand, within SMa0800 at 437.340 kb on - strand, within SMa0800 at 437.462 kb on + strand, within SMa0800 at 437.462 kb on + strand, within SMa0800 at 437.462 kb on + strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.463 kb on - strand, within SMa0800 at 437.495 kb on + strand, within SMa0800 at 437.495 kb on + strand, within SMa0800 at 437.496 kb on - strand, within SMa0800 at 437.496 kb on - strand, within SMa0800 at 437.678 kb on - strand, within SMa0800 at 437.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 435,105 + SMa0796 0.74 +1.7 435,105 + SMa0796 0.74 -0.4 435,105 + SMa0796 0.74 -0.1 435,329 + SMa0796 0.89 +0.1 435,330 - SMa0796 0.89 +0.5 435,330 - SMa0796 0.89 -0.5 435,333 + SMa0796 0.89 +1.0 435,334 - SMa0796 0.89 -0.1 435,420 + -0.4 435,519 - +1.9 435,519 - -0.4 435,545 - SMa0797 0.15 -0.6 435,655 + SMa0797 0.48 +1.3 435,656 - SMa0797 0.49 -0.4 435,665 + SMa0797 0.51 +2.9 435,772 + SMa0797 0.84 +1.9 435,822 - -0.2 435,866 + -0.7 435,866 + -2.6 435,872 - -0.2 435,872 - -0.1 435,905 + -0.9 435,905 + +0.2 435,905 + -0.4 435,906 - -2.0 435,906 - +0.1 435,906 - -0.2 436,062 - SMa0799 0.20 -1.2 436,062 - SMa0799 0.20 -0.3 436,062 - SMa0799 0.20 -0.5 436,062 - SMa0799 0.20 -1.3 436,207 - SMa0799 0.34 -0.1 436,225 - SMa0799 0.36 -1.5 436,227 + SMa0799 0.36 +0.0 436,227 + SMa0799 0.36 -0.2 436,227 + SMa0799 0.36 -0.0 436,228 - SMa0799 0.36 -0.5 436,228 - SMa0799 0.36 -0.3 436,329 + SMa0799 0.46 -1.0 436,330 - SMa0799 0.46 +0.6 436,381 + SMa0799 0.51 -2.5 436,443 - SMa0799 0.58 +1.1 436,517 + SMa0799 0.65 -0.3 436,657 + SMa0799 0.79 -0.1 436,968 + -1.0 436,969 - +0.3 437,000 + -0.7 437,056 - SMa0800 0.11 +0.3 437,101 - SMa0800 0.16 +0.2 437,142 - SMa0800 0.20 +0.0 437,142 - SMa0800 0.20 -0.3 437,340 - SMa0800 0.43 +0.6 437,462 + SMa0800 0.57 +0.3 437,462 + SMa0800 0.57 -0.3 437,462 + SMa0800 0.57 +0.7 437,463 - SMa0800 0.57 -2.2 437,463 - SMa0800 0.57 +1.2 437,463 - SMa0800 0.57 +0.5 437,463 - SMa0800 0.57 -0.8 437,463 - SMa0800 0.57 -0.1 437,463 - SMa0800 0.57 -0.0 437,495 + SMa0800 0.61 +0.2 437,495 + SMa0800 0.61 -1.2 437,496 - SMa0800 0.61 -2.8 437,496 - SMa0800 0.61 +0.5 437,678 - SMa0800 0.82 -1.8 437,789 + -0.1
Or see this region's nucleotide sequence