Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0489 and SMa0492 are separated by 11 nucleotides SMa0492 and SMa0493 overlap by 4 nucleotides SMa0493 and SMa0495 are separated by 39 nucleotides
SMa0489: SMa0489 - ABC transporter ATP-binding protein, at 267,102 to 267,869
SMa0489
SMa0492: SMa0492 - ABC transporter permease, at 267,881 to 268,564
SMa0492
SMa0493: SMa0493 - ABC transporter permease, at 268,561 to 269,259
SMa0493
SMa0495: SMa0495 - ABC transporter substrate-binding protein, at 269,299 to 270,117
SMa0495
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 267.684 kb on - strand, within SMa0489 at 267.693 kb on - strand, within SMa0489 at 267.693 kb on - strand, within SMa0489 at 267.693 kb on - strand, within SMa0489 at 267.845 kb on + strand at 267.873 kb on + strand at 267.874 kb on - strand at 267.874 kb on - strand at 267.907 kb on - strand at 267.958 kb on - strand, within SMa0492 at 267.980 kb on + strand, within SMa0492 at 267.981 kb on - strand, within SMa0492 at 268.052 kb on - strand, within SMa0492 at 268.052 kb on - strand, within SMa0492 at 268.099 kb on - strand, within SMa0492 at 268.136 kb on + strand, within SMa0492 at 268.137 kb on - strand, within SMa0492 at 268.137 kb on - strand, within SMa0492 at 268.139 kb on - strand, within SMa0492 at 268.141 kb on - strand, within SMa0492 at 268.240 kb on - strand, within SMa0492 at 268.240 kb on - strand, within SMa0492 at 268.240 kb on - strand, within SMa0492 at 268.345 kb on - strand, within SMa0492 at 268.356 kb on - strand, within SMa0492 at 268.392 kb on + strand, within SMa0492 at 268.392 kb on + strand, within SMa0492 at 268.392 kb on + strand, within SMa0492 at 268.392 kb on + strand, within SMa0492 at 268.393 kb on - strand, within SMa0492 at 268.393 kb on - strand, within SMa0492 at 268.393 kb on - strand, within SMa0492 at 268.393 kb on - strand, within SMa0492 at 268.393 kb on - strand, within SMa0492 at 268.396 kb on + strand, within SMa0492 at 268.397 kb on - strand, within SMa0492 at 268.398 kb on + strand, within SMa0492 at 268.399 kb on - strand, within SMa0492 at 268.399 kb on - strand, within SMa0492 at 268.496 kb on + strand at 268.497 kb on - strand at 268.497 kb on - strand at 268.524 kb on - strand at 268.524 kb on - strand at 268.524 kb on - strand at 268.524 kb on - strand at 268.524 kb on - strand at 268.548 kb on - strand at 268.548 kb on - strand at 268.581 kb on + strand at 268.582 kb on - strand at 268.582 kb on - strand at 268.624 kb on - strand at 268.646 kb on + strand, within SMa0493 at 268.646 kb on + strand, within SMa0493 at 268.648 kb on + strand, within SMa0493 at 268.649 kb on - strand, within SMa0493 at 268.649 kb on - strand, within SMa0493 at 268.649 kb on - strand, within SMa0493 at 268.649 kb on - strand, within SMa0493 at 268.649 kb on - strand, within SMa0493 at 268.651 kb on - strand, within SMa0493 at 268.651 kb on - strand, within SMa0493 at 268.651 kb on - strand, within SMa0493 at 268.667 kb on + strand, within SMa0493 at 268.667 kb on + strand, within SMa0493 at 268.667 kb on + strand, within SMa0493 at 268.667 kb on + strand, within SMa0493 at 268.668 kb on - strand, within SMa0493 at 268.668 kb on - strand, within SMa0493 at 269.048 kb on + strand, within SMa0493 at 269.100 kb on - strand, within SMa0493 at 269.228 kb on + strand at 269.354 kb on + strand at 269.355 kb on - strand at 269.355 kb on - strand at 269.361 kb on + strand at 269.362 kb on - strand at 269.406 kb on + strand, within SMa0495 at 269.612 kb on + strand, within SMa0495 at 269.612 kb on + strand, within SMa0495 at 269.612 kb on + strand, within SMa0495 at 269.613 kb on - strand, within SMa0495 at 269.660 kb on + strand, within SMa0495 at 269.661 kb on - strand, within SMa0495 at 269.961 kb on - strand, within SMa0495 at 269.961 kb on - strand, within SMa0495 at 270.005 kb on + strand, within SMa0495 at 270.006 kb on - strand, within SMa0495 at 270.006 kb on - strand, within SMa0495 at 270.006 kb on - strand, within SMa0495 at 270.006 kb on - strand, within SMa0495 at 270.006 kb on - strand, within SMa0495 at 270.076 kb on + strand at 270.173 kb on + strand at 270.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 267,684 - SMa0489 0.76 +0.4 267,693 - SMa0489 0.77 +1.7 267,693 - SMa0489 0.77 +0.3 267,693 - SMa0489 0.77 -0.0 267,845 + +1.1 267,873 + -2.3 267,874 - +0.3 267,874 - -0.3 267,907 - -0.1 267,958 - SMa0492 0.11 -0.5 267,980 + SMa0492 0.14 -0.3 267,981 - SMa0492 0.15 -0.2 268,052 - SMa0492 0.25 -0.8 268,052 - SMa0492 0.25 +0.3 268,099 - SMa0492 0.32 -0.7 268,136 + SMa0492 0.37 -0.4 268,137 - SMa0492 0.37 +0.5 268,137 - SMa0492 0.37 +1.0 268,139 - SMa0492 0.38 -0.6 268,141 - SMa0492 0.38 -1.7 268,240 - SMa0492 0.52 +0.0 268,240 - SMa0492 0.52 +0.5 268,240 - SMa0492 0.52 +0.7 268,345 - SMa0492 0.68 +0.7 268,356 - SMa0492 0.69 -0.1 268,392 + SMa0492 0.75 +0.0 268,392 + SMa0492 0.75 +0.6 268,392 + SMa0492 0.75 +0.0 268,392 + SMa0492 0.75 -0.5 268,393 - SMa0492 0.75 -0.2 268,393 - SMa0492 0.75 -1.7 268,393 - SMa0492 0.75 +0.3 268,393 - SMa0492 0.75 -0.1 268,393 - SMa0492 0.75 +0.5 268,396 + SMa0492 0.75 -0.3 268,397 - SMa0492 0.75 -0.8 268,398 + SMa0492 0.76 -0.2 268,399 - SMa0492 0.76 +0.2 268,399 - SMa0492 0.76 -0.9 268,496 + -0.1 268,497 - -0.6 268,497 - -1.4 268,524 - -0.9 268,524 - -0.3 268,524 - -2.0 268,524 - +1.6 268,524 - -1.7 268,548 - +0.8 268,548 - +1.9 268,581 + -0.2 268,582 - -0.0 268,582 - +0.5 268,624 - -0.4 268,646 + SMa0493 0.12 -0.4 268,646 + SMa0493 0.12 +0.5 268,648 + SMa0493 0.12 -0.6 268,649 - SMa0493 0.13 +0.2 268,649 - SMa0493 0.13 -0.2 268,649 - SMa0493 0.13 -0.3 268,649 - SMa0493 0.13 +1.4 268,649 - SMa0493 0.13 -0.1 268,651 - SMa0493 0.13 -0.8 268,651 - SMa0493 0.13 -0.4 268,651 - SMa0493 0.13 +0.5 268,667 + SMa0493 0.15 +0.5 268,667 + SMa0493 0.15 +0.0 268,667 + SMa0493 0.15 -0.4 268,667 + SMa0493 0.15 +4.8 268,668 - SMa0493 0.15 +0.6 268,668 - SMa0493 0.15 +1.0 269,048 + SMa0493 0.70 +0.4 269,100 - SMa0493 0.77 +0.6 269,228 + -0.4 269,354 + -0.9 269,355 - +0.3 269,355 - +0.9 269,361 + +0.9 269,362 - +2.3 269,406 + SMa0495 0.13 -0.0 269,612 + SMa0495 0.38 -0.2 269,612 + SMa0495 0.38 -0.5 269,612 + SMa0495 0.38 +0.0 269,613 - SMa0495 0.38 +0.4 269,660 + SMa0495 0.44 +0.4 269,661 - SMa0495 0.44 -0.2 269,961 - SMa0495 0.81 -0.3 269,961 - SMa0495 0.81 -0.1 270,005 + SMa0495 0.86 +0.1 270,006 - SMa0495 0.86 -1.8 270,006 - SMa0495 0.86 +0.5 270,006 - SMa0495 0.86 +0.8 270,006 - SMa0495 0.86 -2.1 270,006 - SMa0495 0.86 +0.1 270,076 + +0.3 270,173 + -0.1 270,241 - +0.1
Or see this region's nucleotide sequence