Strain Fitness in Sinorhizobium meliloti 1021 around SMa0355

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0353 and SMa0355 are separated by 174 nucleotidesSMa0355 and SMa0357 are separated by 855 nucleotides SMa0353: SMa0353 - LysR family transcriptional regulator, at 190,833 to 191,747 SMa0353 SMa0355: SMa0355 - LysR family transcriptional regulator, at 191,922 to 192,416 SMa0355 SMa0357: SMa0357 - hypothetical protein, at 193,272 to 193,553 SMa0357 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1at 190.950 kb on + strand, within SMa0353at 191.119 kb on + strand, within SMa0353at 191.120 kb on - strand, within SMa0353at 191.224 kb on + strand, within SMa0353at 191.224 kb on + strand, within SMa0353at 191.225 kb on - strand, within SMa0353at 191.225 kb on - strand, within SMa0353at 191.225 kb on - strand, within SMa0353at 191.225 kb on - strand, within SMa0353at 191.225 kb on - strand, within SMa0353at 191.225 kb on - strand, within SMa0353at 191.226 kb on + strand, within SMa0353at 191.226 kb on + strand, within SMa0353at 191.226 kb on + strand, within SMa0353at 191.227 kb on - strand, within SMa0353at 191.227 kb on - strand, within SMa0353at 191.227 kb on - strand, within SMa0353at 191.277 kb on - strand, within SMa0353at 191.328 kb on - strand, within SMa0353at 191.328 kb on - strand, within SMa0353at 191.421 kb on - strand, within SMa0353at 191.421 kb on - strand, within SMa0353at 191.489 kb on + strand, within SMa0353at 191.489 kb on + strand, within SMa0353at 191.489 kb on + strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.490 kb on - strand, within SMa0353at 191.656 kb on - strandat 191.735 kb on + strandat 191.736 kb on - strandat 191.745 kb on + strandat 191.746 kb on - strandat 191.864 kb on + strandat 191.864 kb on + strandat 191.894 kb on - strandat 191.983 kb on + strand, within SMa0355at 192.023 kb on + strand, within SMa0355at 192.023 kb on + strand, within SMa0355at 192.040 kb on - strand, within SMa0355at 192.040 kb on - strand, within SMa0355at 192.040 kb on - strand, within SMa0355at 192.113 kb on + strand, within SMa0355at 192.114 kb on - strand, within SMa0355at 192.216 kb on - strand, within SMa0355at 192.297 kb on - strand, within SMa0355at 192.627 kb on + strandat 192.627 kb on + strandat 192.630 kb on + strandat 192.630 kb on + strandat 192.644 kb on + strandat 192.645 kb on - strandat 192.676 kb on + strandat 192.677 kb on - strandat 192.808 kb on + strandat 192.840 kb on - strandat 192.840 kb on - strandat 192.841 kb on + strandat 192.841 kb on + strandat 192.910 kb on + strandat 192.911 kb on - strandat 192.911 kb on - strandat 192.914 kb on + strandat 192.915 kb on - strandat 192.957 kb on - strandat 193.012 kb on + strandat 193.060 kb on + strandat 193.103 kb on - strandat 193.124 kb on - strandat 193.295 kb on + strandat 193.296 kb on - strandat 193.317 kb on + strand, within SMa0357at 193.317 kb on + strand, within SMa0357at 193.371 kb on + strand, within SMa0357at 193.371 kb on + strand, within SMa0357at 193.402 kb on + strand, within SMa0357

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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190,950 + SMa0353 0.13 +0.2
191,119 + SMa0353 0.31 -0.9
191,120 - SMa0353 0.31 -0.5
191,224 + SMa0353 0.43 +0.1
191,224 + SMa0353 0.43 -0.1
191,225 - SMa0353 0.43 -0.7
191,225 - SMa0353 0.43 +0.5
191,225 - SMa0353 0.43 +0.3
191,225 - SMa0353 0.43 -0.3
191,225 - SMa0353 0.43 -0.1
191,225 - SMa0353 0.43 -1.1
191,226 + SMa0353 0.43 -1.1
191,226 + SMa0353 0.43 +0.2
191,226 + SMa0353 0.43 +0.4
191,227 - SMa0353 0.43 -1.0
191,227 - SMa0353 0.43 -0.2
191,227 - SMa0353 0.43 +0.2
191,277 - SMa0353 0.49 -1.9
191,328 - SMa0353 0.54 -0.1
191,328 - SMa0353 0.54 -0.7
191,421 - SMa0353 0.64 -0.5
191,421 - SMa0353 0.64 +1.1
191,489 + SMa0353 0.72 +0.3
191,489 + SMa0353 0.72 +1.3
191,489 + SMa0353 0.72 +0.2
191,490 - SMa0353 0.72 +0.1
191,490 - SMa0353 0.72 -0.8
191,490 - SMa0353 0.72 +0.0
191,490 - SMa0353 0.72 +1.3
191,490 - SMa0353 0.72 -0.2
191,490 - SMa0353 0.72 +0.1
191,490 - SMa0353 0.72 -0.2
191,656 - -1.9
191,735 + -1.3
191,736 - -0.2
191,745 + +0.8
191,746 - -0.6
191,864 + -0.0
191,864 + +0.6
191,894 - +0.9
191,983 + SMa0355 0.12 +0.3
192,023 + SMa0355 0.20 -0.6
192,023 + SMa0355 0.20 -0.8
192,040 - SMa0355 0.24 -0.8
192,040 - SMa0355 0.24 -0.3
192,040 - SMa0355 0.24 -0.1
192,113 + SMa0355 0.39 -0.5
192,114 - SMa0355 0.39 -0.4
192,216 - SMa0355 0.59 -0.8
192,297 - SMa0355 0.76 -0.9
192,627 + +0.0
192,627 + +1.2
192,630 + -1.5
192,630 + -0.3
192,644 + -0.1
192,645 - +0.0
192,676 + +1.1
192,677 - -1.7
192,808 + -0.8
192,840 - +0.7
192,840 - +0.0
192,841 + +0.2
192,841 + -2.3
192,910 + -1.6
192,911 - -1.1
192,911 - -0.5
192,914 + -2.0
192,915 - -0.6
192,957 - -1.1
193,012 + -0.1
193,060 + -1.8
193,103 - +1.6
193,124 - +0.2
193,295 + -0.3
193,296 - -0.7
193,317 + SMa0357 0.16 -0.9
193,317 + SMa0357 0.16 -1.6
193,371 + SMa0357 0.35 -0.6
193,371 + SMa0357 0.35 -1.2
193,402 + SMa0357 0.46 -0.1

Or see this region's nucleotide sequence