Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0151 and SMa0155 are separated by 20 nucleotides SMa0155 and SMa0157 are separated by 66 nucleotides SMa0157 and SMa0160 are separated by 128 nucleotides SMa0160 and SMa0162 are separated by 184 nucleotides
SMa0151: SMa0151 - hypothetical protein, at 83,897 to 86,626
SMa0151
SMa0155: SMa0155 - hypothetical protein, at 86,647 to 87,216
SMa0155
SMa0157: SMa0157 - ABC transporter substrate-binding protein, at 87,283 to 88,287
SMa0157
SMa0160: SMa0160 - GntR family transcriptional regulator, at 88,416 to 89,090
SMa0160
SMa0162: SMa0162 - hypothetical protein, at 89,275 to 89,520
SMa0162
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 86.344 kb on + strand, within SMa0151 at 86.400 kb on + strand at 86.400 kb on + strand at 86.401 kb on - strand at 86.401 kb on - strand at 86.401 kb on - strand at 86.401 kb on - strand at 86.469 kb on + strand at 86.469 kb on + strand at 86.470 kb on - strand at 86.470 kb on - strand at 86.470 kb on - strand at 86.470 kb on - strand at 86.514 kb on + strand at 86.542 kb on - strand at 86.567 kb on + strand at 86.769 kb on - strand, within SMa0155 at 87.020 kb on + strand, within SMa0155 at 87.020 kb on + strand, within SMa0155 at 87.021 kb on - strand, within SMa0155 at 87.021 kb on - strand, within SMa0155 at 87.097 kb on + strand, within SMa0155 at 87.097 kb on + strand, within SMa0155 at 87.098 kb on - strand, within SMa0155 at 87.101 kb on + strand, within SMa0155 at 87.101 kb on + strand, within SMa0155 at 87.102 kb on - strand, within SMa0155 at 87.102 kb on - strand, within SMa0155 at 87.112 kb on - strand, within SMa0155 at 87.203 kb on + strand at 87.285 kb on - strand at 87.285 kb on - strand at 87.285 kb on - strand at 87.285 kb on - strand at 87.386 kb on + strand, within SMa0157 at 87.387 kb on - strand, within SMa0157 at 87.387 kb on - strand, within SMa0157 at 87.387 kb on - strand, within SMa0157 at 87.431 kb on + strand, within SMa0157 at 87.431 kb on + strand, within SMa0157 at 87.432 kb on - strand, within SMa0157 at 87.432 kb on - strand, within SMa0157 at 87.432 kb on - strand, within SMa0157 at 87.479 kb on + strand, within SMa0157 at 87.480 kb on - strand, within SMa0157 at 87.556 kb on + strand, within SMa0157 at 87.572 kb on + strand, within SMa0157 at 87.572 kb on + strand, within SMa0157 at 87.572 kb on + strand, within SMa0157 at 87.572 kb on + strand, within SMa0157 at 87.573 kb on - strand, within SMa0157 at 87.573 kb on - strand, within SMa0157 at 87.573 kb on - strand, within SMa0157 at 87.698 kb on + strand, within SMa0157 at 87.895 kb on + strand, within SMa0157 at 88.001 kb on + strand, within SMa0157 at 88.001 kb on + strand, within SMa0157 at 88.001 kb on + strand, within SMa0157 at 88.330 kb on - strand at 88.434 kb on + strand at 88.469 kb on - strand at 88.532 kb on - strand, within SMa0160 at 88.707 kb on - strand, within SMa0160 at 88.789 kb on - strand, within SMa0160 at 88.789 kb on - strand, within SMa0160 at 88.789 kb on - strand, within SMa0160 at 88.804 kb on + strand, within SMa0160 at 88.804 kb on + strand, within SMa0160 at 88.820 kb on - strand, within SMa0160 at 88.822 kb on - strand, within SMa0160 at 88.822 kb on - strand, within SMa0160 at 88.977 kb on - strand, within SMa0160 at 88.977 kb on - strand, within SMa0160 at 89.044 kb on + strand at 89.045 kb on - strand at 89.088 kb on + strand at 89.122 kb on + strand at 89.123 kb on - strand at 89.128 kb on - strand at 89.128 kb on - strand at 89.137 kb on + strand at 89.195 kb on - strand at 89.195 kb on - strand at 89.270 kb on + strand at 89.270 kb on + strand at 89.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 86,344 + SMa0151 0.90 +1.0 86,400 + +0.2 86,400 + +0.2 86,401 - -0.3 86,401 - -2.2 86,401 - +0.2 86,401 - -0.6 86,469 + +0.5 86,469 + -0.1 86,470 - +0.0 86,470 - -1.1 86,470 - +0.6 86,470 - +0.9 86,514 + +0.2 86,542 - -0.9 86,567 + -0.1 86,769 - SMa0155 0.21 -0.6 87,020 + SMa0155 0.65 -0.6 87,020 + SMa0155 0.65 +1.0 87,021 - SMa0155 0.66 -1.4 87,021 - SMa0155 0.66 +0.3 87,097 + SMa0155 0.79 +1.4 87,097 + SMa0155 0.79 +1.1 87,098 - SMa0155 0.79 -0.1 87,101 + SMa0155 0.80 +1.1 87,101 + SMa0155 0.80 -0.6 87,102 - SMa0155 0.80 +0.0 87,102 - SMa0155 0.80 -1.4 87,112 - SMa0155 0.82 +0.6 87,203 + +0.9 87,285 - +0.7 87,285 - +0.1 87,285 - -1.0 87,285 - +0.6 87,386 + SMa0157 0.10 -0.6 87,387 - SMa0157 0.10 +0.3 87,387 - SMa0157 0.10 -0.0 87,387 - SMa0157 0.10 -3.0 87,431 + SMa0157 0.15 -0.3 87,431 + SMa0157 0.15 -1.4 87,432 - SMa0157 0.15 +0.1 87,432 - SMa0157 0.15 -1.2 87,432 - SMa0157 0.15 -0.0 87,479 + SMa0157 0.20 -0.5 87,480 - SMa0157 0.20 -0.3 87,556 + SMa0157 0.27 +0.6 87,572 + SMa0157 0.29 +0.2 87,572 + SMa0157 0.29 -1.3 87,572 + SMa0157 0.29 -1.1 87,572 + SMa0157 0.29 -0.4 87,573 - SMa0157 0.29 -0.4 87,573 - SMa0157 0.29 +0.9 87,573 - SMa0157 0.29 +0.4 87,698 + SMa0157 0.41 -0.7 87,895 + SMa0157 0.61 +0.1 88,001 + SMa0157 0.71 +0.1 88,001 + SMa0157 0.71 -0.2 88,001 + SMa0157 0.71 -0.0 88,330 - -0.5 88,434 + +0.4 88,469 - -0.9 88,532 - SMa0160 0.17 +0.2 88,707 - SMa0160 0.43 -1.1 88,789 - SMa0160 0.55 -0.3 88,789 - SMa0160 0.55 -0.6 88,789 - SMa0160 0.55 +0.2 88,804 + SMa0160 0.57 -1.6 88,804 + SMa0160 0.57 -0.9 88,820 - SMa0160 0.60 -0.9 88,822 - SMa0160 0.60 -1.0 88,822 - SMa0160 0.60 -0.4 88,977 - SMa0160 0.83 -2.6 88,977 - SMa0160 0.83 -0.6 89,044 + -0.5 89,045 - +0.3 89,088 + -0.4 89,122 + -1.9 89,123 - -0.6 89,128 - +0.1 89,128 - +0.9 89,137 + +0.5 89,195 - -0.2 89,195 - -0.5 89,270 + +1.0 89,270 + +0.1 89,271 - -1.6
Or see this region's nucleotide sequence