Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21681

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20907 and SM_b20908 are separated by 224 nucleotidesSM_b20908 and SM_b21680 are separated by 30 nucleotidesSM_b21680 and SM_b21681 are separated by 94 nucleotidesSM_b21681 and SM_b20909 are separated by 111 nucleotidesSM_b20909 and SM_b20910 are separated by 58 nucleotidesSM_b20910 and SM_b20911 are separated by 224 nucleotides SM_b20907: SM_b20907 - hypothetical protein, at 1,317,258 to 1,317,563 _b20907 SM_b20908: SM_b20908 - hypothetical protein, at 1,317,788 to 1,318,126 _b20908 SM_b21680: SM_b21680 - hypothetical protein, at 1,318,157 to 1,318,312 _b21680 SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583 _b21681 SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988 _b20909 SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355 _b20910 SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786 _b20911 Position (kb) 1318 1319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1317.452 kb on - strand, within SM_b20907at 1317.452 kb on - strand, within SM_b20907at 1317.488 kb on + strand, within SM_b20907at 1317.518 kb on + strand, within SM_b20907at 1317.593 kb on + strandat 1317.757 kb on + strandat 1317.758 kb on - strandat 1317.758 kb on - strandat 1317.980 kb on + strand, within SM_b20908at 1317.980 kb on + strand, within SM_b20908at 1317.980 kb on + strand, within SM_b20908at 1317.980 kb on + strand, within SM_b20908at 1317.981 kb on - strand, within SM_b20908at 1317.981 kb on - strand, within SM_b20908at 1318.002 kb on + strand, within SM_b20908at 1318.003 kb on - strand, within SM_b20908at 1318.003 kb on - strand, within SM_b20908at 1318.064 kb on + strand, within SM_b20908at 1318.065 kb on - strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.072 kb on - strand, within SM_b20908at 1318.072 kb on - strand, within SM_b20908at 1318.145 kb on + strandat 1318.178 kb on - strand, within SM_b21680at 1318.237 kb on + strand, within SM_b21680at 1318.237 kb on + strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.400 kb on + strandat 1318.453 kb on + strand, within SM_b21681at 1318.453 kb on + strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.581 kb on + strandat 1318.718 kb on + strandat 1318.826 kb on + strand, within SM_b20909at 1318.827 kb on - strand, within SM_b20909at 1318.963 kb on + strandat 1318.963 kb on + strandat 1318.964 kb on - strandat 1319.022 kb on + strandat 1319.027 kb on + strandat 1319.048 kb on + strandat 1319.130 kb on + strand, within SM_b20910at 1319.131 kb on - strand, within SM_b20910at 1319.131 kb on - strand, within SM_b20910at 1319.178 kb on + strand, within SM_b20910at 1319.178 kb on + strand, within SM_b20910at 1319.179 kb on - strand, within SM_b20910at 1319.254 kb on + strand, within SM_b20910at 1319.269 kb on + strand, within SM_b20910at 1319.270 kb on - strand, within SM_b20910at 1319.270 kb on - strand, within SM_b20910at 1319.416 kb on + strandat 1319.419 kb on - strandat 1319.419 kb on - strandat 1319.419 kb on - strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.428 kb on + strandat 1319.428 kb on + strandat 1319.429 kb on - strandat 1319.429 kb on - strandat 1319.432 kb on + strandat 1319.432 kb on + strandat 1319.432 kb on + strandat 1319.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,317,452 - SM_b20907 0.63 -0.0
1,317,452 - SM_b20907 0.63 -0.4
1,317,488 + SM_b20907 0.75 -0.6
1,317,518 + SM_b20907 0.85 +0.9
1,317,593 + +0.1
1,317,757 + +0.1
1,317,758 - +1.7
1,317,758 - -0.3
1,317,980 + SM_b20908 0.57 -0.4
1,317,980 + SM_b20908 0.57 -0.3
1,317,980 + SM_b20908 0.57 +0.1
1,317,980 + SM_b20908 0.57 -0.3
1,317,981 - SM_b20908 0.57 -1.5
1,317,981 - SM_b20908 0.57 -0.3
1,318,002 + SM_b20908 0.63 +0.1
1,318,003 - SM_b20908 0.63 -0.8
1,318,003 - SM_b20908 0.63 -0.3
1,318,064 + SM_b20908 0.81 -0.7
1,318,065 - SM_b20908 0.82 +0.3
1,318,071 + SM_b20908 0.83 +0.2
1,318,071 + SM_b20908 0.83 -1.2
1,318,071 + SM_b20908 0.83 -0.4
1,318,071 + SM_b20908 0.83 -1.0
1,318,072 - SM_b20908 0.84 -0.9
1,318,072 - SM_b20908 0.84 +0.1
1,318,145 + -1.9
1,318,178 - SM_b21680 0.13 -0.4
1,318,237 + SM_b21680 0.51 +0.4
1,318,237 + SM_b21680 0.51 -0.6
1,318,238 - SM_b21680 0.52 -0.0
1,318,238 - SM_b21680 0.52 +0.1
1,318,238 - SM_b21680 0.52 -0.6
1,318,238 - SM_b21680 0.52 +0.2
1,318,238 - SM_b21680 0.52 -0.4
1,318,239 + SM_b21680 0.53 -0.8
1,318,239 + SM_b21680 0.53 -1.4
1,318,239 + SM_b21680 0.53 -0.6
1,318,239 + SM_b21680 0.53 -2.9
1,318,240 - SM_b21680 0.53 -1.1
1,318,240 - SM_b21680 0.53 +0.1
1,318,240 - SM_b21680 0.53 -0.8
1,318,240 - SM_b21680 0.53 -0.0
1,318,240 - SM_b21680 0.53 -0.1
1,318,400 + -0.2
1,318,453 + SM_b21681 0.26 +0.5
1,318,453 + SM_b21681 0.26 +0.8
1,318,454 - SM_b21681 0.27 +0.3
1,318,454 - SM_b21681 0.27 -0.2
1,318,454 - SM_b21681 0.27 +0.5
1,318,454 - SM_b21681 0.27 -0.4
1,318,454 - SM_b21681 0.27 +0.1
1,318,454 - SM_b21681 0.27 +0.7
1,318,581 + -0.5
1,318,718 + -0.9
1,318,826 + SM_b20909 0.45 +0.1
1,318,827 - SM_b20909 0.45 +0.0
1,318,963 + -0.3
1,318,963 + +1.0
1,318,964 - -2.0
1,319,022 + +1.1
1,319,027 + -1.0
1,319,048 + +2.2
1,319,130 + SM_b20910 0.27 +0.8
1,319,131 - SM_b20910 0.27 +0.2
1,319,131 - SM_b20910 0.27 -0.3
1,319,178 + SM_b20910 0.42 -1.3
1,319,178 + SM_b20910 0.42 -0.3
1,319,179 - SM_b20910 0.43 -0.0
1,319,254 + SM_b20910 0.67 -0.4
1,319,269 + SM_b20910 0.72 -0.9
1,319,270 - SM_b20910 0.72 +0.1
1,319,270 - SM_b20910 0.72 -1.3
1,319,416 + -0.2
1,319,419 - -0.3
1,319,419 - -0.4
1,319,419 - +0.0
1,319,422 + +1.1
1,319,422 + -0.3
1,319,422 + +0.2
1,319,422 + -0.0
1,319,422 + -1.3
1,319,423 - -1.0
1,319,423 - +0.3
1,319,423 - -0.2
1,319,423 - -0.5
1,319,423 - +0.5
1,319,428 + -0.2
1,319,428 + -0.5
1,319,429 - -0.1
1,319,429 - -2.3
1,319,432 + -1.3
1,319,432 + -1.5
1,319,432 + +1.2
1,319,433 - -0.4

Or see this region's nucleotide sequence