Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21320 and SM_b21321 are separated by 34 nucleotides SM_b21321 and SM_b21322 are separated by 42 nucleotides
SM_b21320: SM_b21320 - bifunctional glycosyltransferase, at 987,519 to 990,200
_b21320
SM_b21321: SM_b21321 - hypothetical protein, at 990,235 to 991,413
_b21321
SM_b21322: SM_b21322 - hypothetical protein, at 991,456 to 992,628
_b21322
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 989.305 kb on + strand, within SM_b21320 at 989.335 kb on - strand, within SM_b21320 at 989.354 kb on + strand, within SM_b21320 at 989.354 kb on + strand, within SM_b21320 at 989.355 kb on - strand, within SM_b21320 at 989.355 kb on - strand, within SM_b21320 at 989.355 kb on - strand, within SM_b21320 at 989.355 kb on - strand, within SM_b21320 at 989.412 kb on + strand, within SM_b21320 at 989.412 kb on + strand, within SM_b21320 at 989.412 kb on + strand, within SM_b21320 at 989.413 kb on - strand, within SM_b21320 at 989.413 kb on - strand, within SM_b21320 at 989.413 kb on - strand, within SM_b21320 at 989.451 kb on + strand, within SM_b21320 at 989.452 kb on - strand, within SM_b21320 at 989.592 kb on + strand, within SM_b21320 at 989.592 kb on + strand, within SM_b21320 at 989.592 kb on + strand, within SM_b21320 at 989.593 kb on - strand, within SM_b21320 at 989.593 kb on - strand, within SM_b21320 at 989.593 kb on - strand, within SM_b21320 at 989.594 kb on + strand, within SM_b21320 at 989.595 kb on - strand, within SM_b21320 at 989.595 kb on - strand, within SM_b21320 at 989.595 kb on - strand, within SM_b21320 at 989.595 kb on - strand, within SM_b21320 at 989.595 kb on - strand, within SM_b21320 at 990.274 kb on + strand at 990.275 kb on - strand at 990.316 kb on + strand at 990.376 kb on - strand, within SM_b21321 at 990.465 kb on + strand at 990.466 kb on - strand, within SM_b21321 at 990.466 kb on - strand, within SM_b21321 at 990.706 kb on + strand, within SM_b21321 at 990.763 kb on + strand, within SM_b21321 at 991.012 kb on + strand, within SM_b21321 at 991.013 kb on - strand, within SM_b21321 at 991.051 kb on + strand, within SM_b21321 at 991.411 kb on + strand at 991.439 kb on - strand at 991.451 kb on - strand at 991.451 kb on - strand at 991.451 kb on - strand at 991.461 kb on + strand at 991.461 kb on + strand at 991.462 kb on - strand at 991.462 kb on - strand at 991.487 kb on - strand at 991.563 kb on + strand at 991.609 kb on + strand, within SM_b21322 at 991.610 kb on - strand, within SM_b21322 at 991.660 kb on + strand, within SM_b21322 at 991.661 kb on - strand, within SM_b21322 at 991.708 kb on + strand, within SM_b21322 at 991.709 kb on - strand, within SM_b21322 at 991.709 kb on - strand, within SM_b21322 at 991.709 kb on - strand, within SM_b21322 at 991.909 kb on - strand, within SM_b21322 at 992.098 kb on + strand, within SM_b21322 at 992.098 kb on + strand, within SM_b21322 at 992.167 kb on + strand, within SM_b21322 at 992.186 kb on + strand, within SM_b21322 at 992.187 kb on - strand, within SM_b21322 at 992.194 kb on + strand, within SM_b21322 at 992.234 kb on - strand, within SM_b21322 at 992.272 kb on + strand, within SM_b21322 at 992.273 kb on - strand, within SM_b21322
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 989,305 + SM_b21320 0.67 -0.8 989,335 - SM_b21320 0.68 -0.3 989,354 + SM_b21320 0.68 +1.0 989,354 + SM_b21320 0.68 -0.6 989,355 - SM_b21320 0.68 -0.7 989,355 - SM_b21320 0.68 -1.3 989,355 - SM_b21320 0.68 -0.2 989,355 - SM_b21320 0.68 -0.8 989,412 + SM_b21320 0.71 +2.0 989,412 + SM_b21320 0.71 -0.1 989,412 + SM_b21320 0.71 -1.0 989,413 - SM_b21320 0.71 -0.7 989,413 - SM_b21320 0.71 -0.4 989,413 - SM_b21320 0.71 -2.7 989,451 + SM_b21320 0.72 -0.2 989,452 - SM_b21320 0.72 -1.7 989,592 + SM_b21320 0.77 +0.1 989,592 + SM_b21320 0.77 -0.8 989,592 + SM_b21320 0.77 +0.1 989,593 - SM_b21320 0.77 -0.1 989,593 - SM_b21320 0.77 -0.5 989,593 - SM_b21320 0.77 +0.3 989,594 + SM_b21320 0.77 +0.4 989,595 - SM_b21320 0.77 -0.0 989,595 - SM_b21320 0.77 -1.3 989,595 - SM_b21320 0.77 -0.3 989,595 - SM_b21320 0.77 -0.5 989,595 - SM_b21320 0.77 +1.2 990,274 + +0.2 990,275 - +1.0 990,316 + +0.1 990,376 - SM_b21321 0.12 -0.4 990,465 + -0.4 990,466 - SM_b21321 0.20 -0.0 990,466 - SM_b21321 0.20 -0.2 990,706 + SM_b21321 0.40 -0.2 990,763 + SM_b21321 0.45 -0.7 991,012 + SM_b21321 0.66 -0.6 991,013 - SM_b21321 0.66 -0.2 991,051 + SM_b21321 0.69 -1.8 991,411 + +0.1 991,439 - +0.2 991,451 - -0.7 991,451 - -0.1 991,451 - +1.3 991,461 + +0.4 991,461 + -0.2 991,462 - +0.4 991,462 - +0.6 991,487 - +0.1 991,563 + -1.1 991,609 + SM_b21322 0.13 +0.4 991,610 - SM_b21322 0.13 +1.6 991,660 + SM_b21322 0.17 -0.0 991,661 - SM_b21322 0.17 -0.0 991,708 + SM_b21322 0.21 +0.1 991,709 - SM_b21322 0.22 +0.4 991,709 - SM_b21322 0.22 -0.2 991,709 - SM_b21322 0.22 -1.0 991,909 - SM_b21322 0.39 +0.2 992,098 + SM_b21322 0.55 -0.1 992,098 + SM_b21322 0.55 -1.3 992,167 + SM_b21322 0.61 +2.4 992,186 + SM_b21322 0.62 -0.8 992,187 - SM_b21322 0.62 -0.1 992,194 + SM_b21322 0.63 -0.2 992,234 - SM_b21322 0.66 -1.2 992,272 + SM_b21322 0.70 +0.6 992,273 - SM_b21322 0.70 -0.1
Or see this region's nucleotide sequence