Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21237

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21236 and SM_b21237 are separated by 82 nucleotidesSM_b21237 and SM_b21238 are separated by 40 nucleotidesSM_b21238 and SM_b21239 overlap by 20 nucleotides SM_b21236: SM_b21236 - ATPGTP-binding protein, at 802,253 to 803,104 _b21236 SM_b21237: SM_b21237 - sulfotransferase domain-containing protein, at 803,187 to 804,110 _b21237 SM_b21238: SM_b21238 - hypothetical protein, at 804,151 to 804,381 _b21238 SM_b21239: SM_b21239 - pectate lysase, at 804,362 to 805,600 _b21239 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 802.201 kb on + strandat 802.201 kb on + strandat 802.202 kb on - strandat 802.202 kb on - strandat 802.202 kb on - strandat 802.260 kb on + strandat 802.261 kb on - strandat 802.277 kb on + strandat 802.525 kb on + strand, within SM_b21236at 802.525 kb on + strand, within SM_b21236at 802.525 kb on + strand, within SM_b21236at 802.526 kb on - strand, within SM_b21236at 802.545 kb on + strand, within SM_b21236at 802.545 kb on + strand, within SM_b21236at 802.545 kb on + strand, within SM_b21236at 802.545 kb on + strand, within SM_b21236at 802.545 kb on + strand, within SM_b21236at 802.546 kb on - strand, within SM_b21236at 802.546 kb on - strand, within SM_b21236at 802.546 kb on - strand, within SM_b21236at 802.611 kb on + strand, within SM_b21236at 802.616 kb on + strand, within SM_b21236at 802.616 kb on + strand, within SM_b21236at 802.617 kb on - strand, within SM_b21236at 802.664 kb on + strand, within SM_b21236at 802.816 kb on + strand, within SM_b21236at 802.817 kb on - strand, within SM_b21236at 802.817 kb on - strand, within SM_b21236at 802.819 kb on + strand, within SM_b21236at 802.819 kb on + strand, within SM_b21236at 802.820 kb on - strand, within SM_b21236at 802.820 kb on - strand, within SM_b21236at 802.878 kb on + strand, within SM_b21236at 802.878 kb on + strand, within SM_b21236at 802.883 kb on - strand, within SM_b21236at 802.889 kb on + strand, within SM_b21236at 802.890 kb on - strand, within SM_b21236at 802.937 kb on + strand, within SM_b21236at 802.938 kb on - strand, within SM_b21236at 803.167 kb on - strandat 803.214 kb on + strandat 803.216 kb on + strandat 803.217 kb on - strandat 803.217 kb on - strandat 803.248 kb on + strandat 803.248 kb on + strandat 803.248 kb on + strandat 803.249 kb on - strandat 803.249 kb on - strandat 803.299 kb on + strand, within SM_b21237at 803.300 kb on - strand, within SM_b21237at 803.338 kb on - strand, within SM_b21237at 803.433 kb on + strand, within SM_b21237at 803.433 kb on + strand, within SM_b21237at 803.433 kb on + strand, within SM_b21237at 803.434 kb on - strand, within SM_b21237at 803.434 kb on - strand, within SM_b21237at 803.520 kb on + strand, within SM_b21237at 803.520 kb on + strand, within SM_b21237at 803.520 kb on + strand, within SM_b21237at 803.524 kb on + strand, within SM_b21237at 803.525 kb on - strand, within SM_b21237at 803.532 kb on - strand, within SM_b21237at 803.681 kb on - strand, within SM_b21237at 803.681 kb on - strand, within SM_b21237at 803.681 kb on - strand, within SM_b21237at 803.704 kb on - strandat 803.802 kb on + strand, within SM_b21237at 803.802 kb on + strand, within SM_b21237at 803.802 kb on + strand, within SM_b21237at 803.847 kb on + strand, within SM_b21237at 803.879 kb on + strand, within SM_b21237at 803.879 kb on + strand, within SM_b21237at 803.880 kb on - strand, within SM_b21237at 803.927 kb on + strandat 803.927 kb on + strand, within SM_b21237at 803.928 kb on - strand, within SM_b21237at 803.971 kb on + strand, within SM_b21237at 803.971 kb on + strand, within SM_b21237at 803.971 kb on + strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 804.102 kb on + strandat 804.103 kb on - strandat 804.103 kb on - strandat 804.103 kb on - strandat 804.123 kb on + strandat 804.123 kb on + strandat 804.158 kb on + strandat 804.159 kb on - strandat 804.163 kb on + strandat 804.164 kb on - strandat 804.216 kb on - strand, within SM_b21238at 804.389 kb on + strandat 804.389 kb on + strandat 804.389 kb on + strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.464 kb on - strandat 804.698 kb on + strand, within SM_b21239at 804.734 kb on - strand, within SM_b21239at 804.734 kb on - strand, within SM_b21239at 804.734 kb on - strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.008 kb on - strand, within SM_b21239at 805.008 kb on - strand, within SM_b21239at 805.014 kb on + strand, within SM_b21239at 805.048 kb on + strand, within SM_b21239at 805.049 kb on - strand, within SM_b21239at 805.064 kb on + strand, within SM_b21239at 805.065 kb on - strand, within SM_b21239

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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802,201 + +0.2
802,201 + -0.4
802,202 - -0.0
802,202 - -0.6
802,202 - -1.1
802,260 + -0.2
802,261 - -1.0
802,277 + +0.3
802,525 + SM_b21236 0.32 -0.3
802,525 + SM_b21236 0.32 -0.1
802,525 + SM_b21236 0.32 +0.1
802,526 - SM_b21236 0.32 -0.2
802,545 + SM_b21236 0.34 -1.2
802,545 + SM_b21236 0.34 -0.3
802,545 + SM_b21236 0.34 -0.2
802,545 + SM_b21236 0.34 +1.2
802,545 + SM_b21236 0.34 +0.8
802,546 - SM_b21236 0.34 +0.1
802,546 - SM_b21236 0.34 -0.0
802,546 - SM_b21236 0.34 -1.5
802,611 + SM_b21236 0.42 -0.0
802,616 + SM_b21236 0.43 -0.4
802,616 + SM_b21236 0.43 +0.2
802,617 - SM_b21236 0.43 +0.7
802,664 + SM_b21236 0.48 +0.4
802,816 + SM_b21236 0.66 -0.6
802,817 - SM_b21236 0.66 -0.0
802,817 - SM_b21236 0.66 -0.9
802,819 + SM_b21236 0.66 +0.2
802,819 + SM_b21236 0.66 -2.5
802,820 - SM_b21236 0.67 -0.1
802,820 - SM_b21236 0.67 +1.0
802,878 + SM_b21236 0.73 -0.5
802,878 + SM_b21236 0.73 -0.2
802,883 - SM_b21236 0.74 +1.0
802,889 + SM_b21236 0.75 -0.9
802,890 - SM_b21236 0.75 +0.4
802,937 + SM_b21236 0.80 -0.3
802,938 - SM_b21236 0.80 -0.2
803,167 - -0.3
803,214 + +0.4
803,216 + +0.3
803,217 - +1.3
803,217 - -1.2
803,248 + -0.6
803,248 + +0.5
803,248 + -1.3
803,249 - -0.5
803,249 - +1.3
803,299 + SM_b21237 0.12 -0.7
803,300 - SM_b21237 0.12 +0.8
803,338 - SM_b21237 0.16 -1.2
803,433 + SM_b21237 0.27 -0.7
803,433 + SM_b21237 0.27 -1.5
803,433 + SM_b21237 0.27 +0.0
803,434 - SM_b21237 0.27 -3.7
803,434 - SM_b21237 0.27 +0.4
803,520 + SM_b21237 0.36 +0.3
803,520 + SM_b21237 0.36 -0.6
803,520 + SM_b21237 0.36 -1.6
803,524 + SM_b21237 0.36 -0.4
803,525 - SM_b21237 0.37 -0.9
803,532 - SM_b21237 0.37 +0.9
803,681 - SM_b21237 0.53 -0.6
803,681 - SM_b21237 0.53 -0.9
803,681 - SM_b21237 0.53 -0.5
803,704 - +0.6
803,802 + SM_b21237 0.67 +0.3
803,802 + SM_b21237 0.67 +0.6
803,802 + SM_b21237 0.67 +0.1
803,847 + SM_b21237 0.71 -0.8
803,879 + SM_b21237 0.75 +0.3
803,879 + SM_b21237 0.75 -0.4
803,880 - SM_b21237 0.75 +1.7
803,927 + +2.6
803,927 + SM_b21237 0.80 +0.6
803,928 - SM_b21237 0.80 -1.1
803,971 + SM_b21237 0.85 -2.0
803,971 + SM_b21237 0.85 +0.1
803,971 + SM_b21237 0.85 -0.5
803,972 - SM_b21237 0.85 -0.2
803,972 - SM_b21237 0.85 -1.5
803,972 - SM_b21237 0.85 -0.5
803,972 - SM_b21237 0.85 +0.3
804,102 + -0.2
804,103 - -0.1
804,103 - -0.4
804,103 - +1.8
804,123 + -1.4
804,123 + -0.7
804,158 + -0.3
804,159 - -0.9
804,163 + -0.6
804,164 - +1.1
804,216 - SM_b21238 0.28 -1.3
804,389 + -0.1
804,389 + -0.4
804,389 + -0.8
804,390 - -0.0
804,390 - -1.2
804,390 - +0.4
804,390 - -0.3
804,390 - +0.3
804,464 - +2.5
804,698 + SM_b21239 0.27 +0.0
804,734 - SM_b21239 0.30 +0.3
804,734 - SM_b21239 0.30 +0.2
804,734 - SM_b21239 0.30 -0.4
804,808 + SM_b21239 0.36 -0.6
804,808 + SM_b21239 0.36 -0.9
804,808 + SM_b21239 0.36 +0.4
804,808 + SM_b21239 0.36 +0.9
805,007 + SM_b21239 0.52 -0.8
805,007 + SM_b21239 0.52 +0.2
805,007 + SM_b21239 0.52 +0.2
805,008 - SM_b21239 0.52 +0.3
805,008 - SM_b21239 0.52 +0.3
805,014 + SM_b21239 0.53 -1.3
805,048 + SM_b21239 0.55 -0.0
805,049 - SM_b21239 0.55 +0.7
805,064 + SM_b21239 0.57 -1.2
805,065 - SM_b21239 0.57 -0.3

Or see this region's nucleotide sequence