Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21134 and SM_b21135 are separated by 156 nucleotides SM_b21135 and SM_b21136 are separated by 39 nucleotides SM_b21136 and SM_b21137 are separated by 5 nucleotides
SM_b21134: SM_b21134 - amino acid processing enzyme, low specificity D-threonine aldolase, at 773,181 to 774,239
_b21134
SM_b21135: SM_b21135 - amino acid ABC transporter substrate-binding protein, at 774,396 to 775,238
_b21135
SM_b21136: SM_b21136 - amino acid ABC transporter permease, at 775,278 to 775,964
_b21136
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 773.419 kb on - strand, within SM_b21134 at 773.559 kb on - strand, within SM_b21134 at 773.560 kb on + strand, within SM_b21134 at 773.560 kb on + strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.566 kb on + strand, within SM_b21134 at 773.566 kb on + strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.570 kb on + strand, within SM_b21134 at 773.570 kb on + strand, within SM_b21134 at 773.571 kb on - strand, within SM_b21134 at 773.571 kb on - strand, within SM_b21134 at 773.618 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.642 kb on + strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.990 kb on - strand, within SM_b21134 at 773.990 kb on - strand, within SM_b21134 at 773.990 kb on - strand, within SM_b21134 at 774.160 kb on + strand at 774.161 kb on - strand at 774.280 kb on - strand at 774.300 kb on + strand at 774.301 kb on - strand at 774.762 kb on + strand, within SM_b21135 at 774.763 kb on - strand, within SM_b21135 at 774.766 kb on - strand, within SM_b21135 at 774.807 kb on + strand, within SM_b21135 at 774.807 kb on + strand, within SM_b21135 at 774.817 kb on - strand, within SM_b21135 at 774.873 kb on + strand, within SM_b21135 at 774.873 kb on + strand, within SM_b21135 at 774.924 kb on + strand, within SM_b21135 at 774.924 kb on + strand, within SM_b21135 at 774.945 kb on + strand, within SM_b21135 at 774.983 kb on + strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.033 kb on - strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.048 kb on - strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.161 kb on + strand at 775.161 kb on + strand at 775.162 kb on - strand at 775.230 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.480 kb on - strand, within SM_b21136 at 775.531 kb on - strand, within SM_b21136 at 775.600 kb on - strand, within SM_b21136 at 775.611 kb on + strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.689 kb on - strand, within SM_b21136 at 775.703 kb on - strand, within SM_b21136 at 775.760 kb on + strand, within SM_b21136 at 775.785 kb on - strand, within SM_b21136 at 775.894 kb on - strand, within SM_b21136 at 776.195 kb on + strand, within SM_b21137 at 776.195 kb on + strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.219 kb on - strand, within SM_b21137
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 773,419 - SM_b21134 0.22 +0.6 773,559 - SM_b21134 0.36 +0.4 773,560 + SM_b21134 0.36 +0.1 773,560 + SM_b21134 0.36 +0.6 773,561 - SM_b21134 0.36 +0.6 773,561 - SM_b21134 0.36 +0.2 773,561 - SM_b21134 0.36 -0.3 773,566 + SM_b21134 0.36 +0.3 773,566 + SM_b21134 0.36 -1.2 773,567 - SM_b21134 0.36 -0.5 773,567 - SM_b21134 0.36 +0.2 773,567 - SM_b21134 0.36 -0.0 773,570 + SM_b21134 0.37 +1.4 773,570 + SM_b21134 0.37 -0.0 773,571 - SM_b21134 0.37 +2.6 773,571 - SM_b21134 0.37 -0.6 773,618 + SM_b21134 0.41 +0.5 773,639 + SM_b21134 0.43 +0.4 773,639 + SM_b21134 0.43 +0.7 773,639 + SM_b21134 0.43 -0.3 773,640 - SM_b21134 0.43 -0.2 773,640 - SM_b21134 0.43 +0.2 773,640 - SM_b21134 0.43 +0.5 773,640 - SM_b21134 0.43 -0.0 773,642 + SM_b21134 0.44 +0.2 773,732 - SM_b21134 0.52 +0.6 773,732 - SM_b21134 0.52 -0.1 773,732 - SM_b21134 0.52 -0.3 773,989 + SM_b21134 0.76 -0.5 773,989 + SM_b21134 0.76 -0.1 773,989 + SM_b21134 0.76 -0.1 773,989 + SM_b21134 0.76 +0.2 773,990 - SM_b21134 0.76 +1.3 773,990 - SM_b21134 0.76 +0.1 773,990 - SM_b21134 0.76 -0.2 774,160 + -0.0 774,161 - +0.3 774,280 - +0.6 774,300 + +0.2 774,301 - +0.4 774,762 + SM_b21135 0.43 -0.2 774,763 - SM_b21135 0.44 +0.0 774,766 - SM_b21135 0.44 +0.5 774,807 + SM_b21135 0.49 -0.1 774,807 + SM_b21135 0.49 +0.7 774,817 - SM_b21135 0.50 +0.1 774,873 + SM_b21135 0.57 -0.0 774,873 + SM_b21135 0.57 -0.5 774,924 + SM_b21135 0.63 +0.8 774,924 + SM_b21135 0.63 +0.6 774,945 + SM_b21135 0.65 +0.4 774,983 + SM_b21135 0.70 +0.2 775,009 - SM_b21135 0.73 +0.4 775,009 - SM_b21135 0.73 +0.1 775,033 - SM_b21135 0.76 +0.4 775,034 + SM_b21135 0.76 +0.1 775,034 + SM_b21135 0.76 -2.3 775,048 - SM_b21135 0.77 -1.4 775,068 + SM_b21135 0.80 +0.6 775,068 + SM_b21135 0.80 +0.1 775,069 - SM_b21135 0.80 -0.0 775,069 - SM_b21135 0.80 +0.8 775,069 - SM_b21135 0.80 +0.8 775,161 + +0.5 775,161 + +1.9 775,162 - +0.4 775,230 + +0.1 775,308 + -1.4 775,308 + +0.3 775,308 + -0.6 775,308 + -1.4 775,308 + +0.7 775,308 + +0.2 775,309 - -0.3 775,309 - +0.8 775,309 - +1.0 775,309 - +0.4 775,309 - -0.1 775,309 - -0.7 775,309 - -0.0 775,309 - +0.0 775,480 - SM_b21136 0.29 +2.9 775,531 - SM_b21136 0.37 -0.0 775,600 - SM_b21136 0.47 -0.4 775,611 + SM_b21136 0.48 -1.0 775,612 - SM_b21136 0.49 -0.1 775,612 - SM_b21136 0.49 +0.2 775,612 - SM_b21136 0.49 -0.2 775,689 - SM_b21136 0.60 -0.1 775,703 - SM_b21136 0.62 +0.8 775,760 + SM_b21136 0.70 -0.9 775,785 - SM_b21136 0.74 -0.1 775,894 - SM_b21136 0.90 +0.9 776,195 + SM_b21137 0.34 -0.2 776,195 + SM_b21137 0.34 +0.6 776,196 - SM_b21137 0.34 +0.1 776,196 - SM_b21137 0.34 -0.0 776,196 - SM_b21137 0.34 +0.3 776,198 + SM_b21137 0.35 -0.3 776,198 + SM_b21137 0.35 +0.7 776,199 - SM_b21137 0.35 +0.3 776,199 - SM_b21137 0.35 -0.9 776,199 - SM_b21137 0.35 -0.3 776,219 - SM_b21137 0.38 +0.0
Or see this region's nucleotide sequence