Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21053

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21052 and SM_b21053 are separated by 19 nucleotidesSM_b21053 and SM_b21054 are separated by 88 nucleotidesSM_b21054 and SM_b21055 are separated by 232 nucleotides SM_b21052: SM_b21052 - epimerase dehydratase, at 685,581 to 686,546 _b21052 SM_b21053: SM_b21053 - membrane-anchored glycosyltransferase, at 686,566 to 687,816 _b21053 SM_b21054: SM_b21054 - hypothetical protein, at 687,905 to 688,522 _b21054 SM_b21055: SM_b21055 - hypothetical protein, at 688,755 to 689,339 _b21055 Position (kb) 686 687 688Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 685.572 kb on - strandat 685.709 kb on + strand, within SM_b21052at 685.710 kb on - strand, within SM_b21052at 685.745 kb on - strand, within SM_b21052at 685.788 kb on + strand, within SM_b21052at 685.789 kb on - strand, within SM_b21052at 685.878 kb on - strand, within SM_b21052at 685.935 kb on + strand, within SM_b21052at 686.022 kb on + strand, within SM_b21052at 686.023 kb on - strand, within SM_b21052at 686.053 kb on - strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.115 kb on + strandat 686.115 kb on + strand, within SM_b21052at 686.115 kb on + strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.118 kb on - strand, within SM_b21052at 686.227 kb on - strand, within SM_b21052at 686.393 kb on + strand, within SM_b21052at 686.394 kb on - strand, within SM_b21052at 686.394 kb on - strand, within SM_b21052at 686.482 kb on + strandat 686.483 kb on - strandat 686.483 kb on - strandat 686.483 kb on - strandat 686.686 kb on + strandat 686.687 kb on - strandat 686.698 kb on + strand, within SM_b21053at 686.848 kb on + strand, within SM_b21053at 686.849 kb on - strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.870 kb on - strand, within SM_b21053at 686.912 kb on - strand, within SM_b21053at 686.912 kb on - strand, within SM_b21053at 686.934 kb on - strand, within SM_b21053at 686.956 kb on - strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.191 kb on + strand, within SM_b21053at 687.212 kb on + strand, within SM_b21053at 687.242 kb on + strand, within SM_b21053at 687.242 kb on + strand, within SM_b21053at 687.304 kb on + strand, within SM_b21053at 687.377 kb on - strand, within SM_b21053at 687.401 kb on - strand, within SM_b21053at 687.496 kb on + strand, within SM_b21053at 687.497 kb on - strand, within SM_b21053at 687.497 kb on - strand, within SM_b21053at 687.514 kb on - strand, within SM_b21053at 687.607 kb on - strand, within SM_b21053at 687.607 kb on - strand, within SM_b21053at 687.683 kb on + strand, within SM_b21053at 687.684 kb on - strand, within SM_b21053at 687.786 kb on - strandat 687.797 kb on - strandat 687.824 kb on + strandat 687.824 kb on + strandat 687.824 kb on + strandat 687.825 kb on - strandat 687.831 kb on + strandat 687.831 kb on + strandat 687.831 kb on + strandat 687.832 kb on - strandat 687.832 kb on - strandat 687.832 kb on - strandat 687.832 kb on - strandat 687.947 kb on - strandat 687.947 kb on - strandat 687.947 kb on - strandat 687.949 kb on - strandat 687.949 kb on - strandat 687.961 kb on - strandat 688.015 kb on + strand, within SM_b21054at 688.051 kb on - strand, within SM_b21054at 688.190 kb on - strand, within SM_b21054at 688.204 kb on - strand, within SM_b21054at 688.204 kb on - strand, within SM_b21054at 688.216 kb on + strand, within SM_b21054at 688.217 kb on - strand, within SM_b21054at 688.249 kb on + strand, within SM_b21054at 688.250 kb on - strand, within SM_b21054at 688.276 kb on + strand, within SM_b21054at 688.286 kb on + strand, within SM_b21054at 688.287 kb on - strand, within SM_b21054at 688.302 kb on + strand, within SM_b21054at 688.395 kb on + strand, within SM_b21054at 688.406 kb on - strand, within SM_b21054at 688.447 kb on + strand, within SM_b21054at 688.518 kb on + strandat 688.518 kb on + strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.545 kb on - strandat 688.565 kb on + strandat 688.566 kb on - strandat 688.566 kb on - strandat 688.613 kb on + strandat 688.614 kb on - strandat 688.641 kb on - strandat 688.641 kb on - strandat 688.680 kb on + strandat 688.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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685,572 - -0.4
685,709 + SM_b21052 0.13 -1.8
685,710 - SM_b21052 0.13 +0.3
685,745 - SM_b21052 0.17 +1.6
685,788 + SM_b21052 0.21 +0.5
685,789 - SM_b21052 0.22 +0.5
685,878 - SM_b21052 0.31 -0.9
685,935 + SM_b21052 0.37 +0.3
686,022 + SM_b21052 0.46 +0.2
686,023 - SM_b21052 0.46 +1.2
686,053 - SM_b21052 0.49 -0.6
686,056 + SM_b21052 0.49 -0.8
686,056 + SM_b21052 0.49 +0.6
686,057 - SM_b21052 0.49 +0.1
686,057 - SM_b21052 0.49 -0.2
686,057 - SM_b21052 0.49 +0.3
686,064 + SM_b21052 0.50 -0.3
686,064 + SM_b21052 0.50 -0.9
686,065 - SM_b21052 0.50 +0.9
686,065 - SM_b21052 0.50 -0.7
686,115 + +1.6
686,115 + SM_b21052 0.55 +0.9
686,115 + SM_b21052 0.55 -0.5
686,116 - SM_b21052 0.55 -0.1
686,116 - SM_b21052 0.55 -0.2
686,116 - SM_b21052 0.55 -0.7
686,118 - SM_b21052 0.56 +0.1
686,227 - SM_b21052 0.67 -0.4
686,393 + SM_b21052 0.84 +0.7
686,394 - SM_b21052 0.84 -0.4
686,394 - SM_b21052 0.84 -0.5
686,482 + -0.5
686,483 - -0.6
686,483 - -0.4
686,483 - -0.1
686,686 + +0.1
686,687 - +0.2
686,698 + SM_b21053 0.11 -1.1
686,848 + SM_b21053 0.23 +0.1
686,849 - SM_b21053 0.23 -0.5
686,850 + SM_b21053 0.23 -0.1
686,850 + SM_b21053 0.23 -0.7
686,850 + SM_b21053 0.23 +1.5
686,851 - SM_b21053 0.23 -0.4
686,851 - SM_b21053 0.23 -0.1
686,851 - SM_b21053 0.23 -0.1
686,851 - SM_b21053 0.23 -0.9
686,870 - SM_b21053 0.24 -0.3
686,912 - SM_b21053 0.28 +1.1
686,912 - SM_b21053 0.28 -0.6
686,934 - SM_b21053 0.29 +1.2
686,956 - SM_b21053 0.31 +0.4
687,062 + SM_b21053 0.40 +0.0
687,062 + SM_b21053 0.40 +0.6
687,062 + SM_b21053 0.40 -0.9
687,191 + SM_b21053 0.50 +0.2
687,212 + SM_b21053 0.52 -2.3
687,242 + SM_b21053 0.54 -1.2
687,242 + SM_b21053 0.54 -0.2
687,304 + SM_b21053 0.59 -1.7
687,377 - SM_b21053 0.65 +0.2
687,401 - SM_b21053 0.67 -1.1
687,496 + SM_b21053 0.74 -1.2
687,497 - SM_b21053 0.74 -0.4
687,497 - SM_b21053 0.74 -1.1
687,514 - SM_b21053 0.76 +0.3
687,607 - SM_b21053 0.83 -0.5
687,607 - SM_b21053 0.83 -1.3
687,683 + SM_b21053 0.89 -0.6
687,684 - SM_b21053 0.89 -0.5
687,786 - -0.0
687,797 - +0.1
687,824 + -1.4
687,824 + -2.2
687,824 + -1.4
687,825 - -0.0
687,831 + +1.0
687,831 + -1.2
687,831 + -0.7
687,832 - -0.7
687,832 - -0.2
687,832 - -1.4
687,832 - -0.4
687,947 - +0.2
687,947 - -0.1
687,947 - -0.6
687,949 - +1.9
687,949 - -0.6
687,961 - +0.1
688,015 + SM_b21054 0.18 +0.1
688,051 - SM_b21054 0.24 -0.2
688,190 - SM_b21054 0.46 -0.3
688,204 - SM_b21054 0.48 +0.2
688,204 - SM_b21054 0.48 -0.4
688,216 + SM_b21054 0.50 -0.2
688,217 - SM_b21054 0.50 -1.7
688,249 + SM_b21054 0.56 +0.8
688,250 - SM_b21054 0.56 +0.7
688,276 + SM_b21054 0.60 -0.2
688,286 + SM_b21054 0.62 -3.4
688,287 - SM_b21054 0.62 +0.2
688,302 + SM_b21054 0.64 +1.4
688,395 + SM_b21054 0.79 +1.2
688,406 - SM_b21054 0.81 -0.4
688,447 + SM_b21054 0.88 -0.5
688,518 + -0.4
688,518 + -0.6
688,519 - -0.1
688,519 - -3.7
688,519 - -0.7
688,519 - -0.1
688,545 - +0.3
688,565 + +0.4
688,566 - -0.0
688,566 - -0.6
688,613 + +0.9
688,614 - -0.9
688,641 - -0.4
688,641 - +1.3
688,680 + -0.7
688,718 + +0.5

Or see this region's nucleotide sequence