Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21025 and SM_b21026 are separated by 143 nucleotides SM_b21026 and SM_b21027 are separated by 696 nucleotides SM_b21027 and SM_b21028 are separated by 214 nucleotides SM_b21028 and SM_b21029 are separated by 97 nucleotides
SM_b21025: SM_b21025 - hypothetical protein, at 647,391 to 647,810
_b21025
SM_b21026: SM_b21026 - exopeptide, at 647,954 to 648,091
_b21026
SM_b21027: SM_b21027 - hypothetical protein, at 648,788 to 649,504
_b21027
SM_b21028: SM_b21028 - hypothetical protein, at 649,719 to 649,880
_b21028
SM_b21029: SM_b21029 - hypothetical protein, at 649,978 to 650,502
_b21029
Position (kb) 648
649
650 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 647.820 kb on - strand at 647.934 kb on + strand at 647.935 kb on - strand at 647.935 kb on - strand at 647.935 kb on - strand at 647.960 kb on + strand at 647.961 kb on - strand at 648.062 kb on + strand, within SM_b21026 at 648.062 kb on + strand, within SM_b21026 at 648.062 kb on + strand, within SM_b21026 at 648.063 kb on - strand, within SM_b21026 at 648.096 kb on + strand at 648.097 kb on - strand at 648.097 kb on - strand at 648.097 kb on - strand at 648.099 kb on + strand at 648.100 kb on - strand at 648.135 kb on + strand at 648.135 kb on + strand at 648.136 kb on - strand at 648.214 kb on + strand at 648.223 kb on + strand at 648.223 kb on + strand at 648.224 kb on - strand at 648.285 kb on - strand at 648.296 kb on + strand at 648.297 kb on - strand at 648.297 kb on - strand at 648.539 kb on + strand at 648.539 kb on + strand at 648.540 kb on - strand at 648.593 kb on - strand at 648.593 kb on - strand at 648.594 kb on + strand at 648.594 kb on + strand at 648.595 kb on - strand at 648.635 kb on - strand at 648.699 kb on + strand at 648.731 kb on + strand at 648.756 kb on + strand at 648.773 kb on + strand at 648.796 kb on + strand at 648.796 kb on + strand at 648.861 kb on + strand, within SM_b21027 at 648.861 kb on + strand, within SM_b21027 at 648.861 kb on + strand, within SM_b21027 at 648.861 kb on + strand, within SM_b21027 at 648.862 kb on - strand, within SM_b21027 at 648.862 kb on - strand, within SM_b21027 at 648.877 kb on - strand, within SM_b21027 at 648.879 kb on - strand, within SM_b21027 at 648.879 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.175 kb on + strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.420 kb on + strand, within SM_b21027 at 649.447 kb on + strand at 649.560 kb on + strand at 649.560 kb on + strand at 649.560 kb on + strand at 649.561 kb on - strand at 649.611 kb on - strand at 649.644 kb on + strand at 649.645 kb on - strand at 649.654 kb on + strand at 649.657 kb on - strand at 649.657 kb on - strand at 649.707 kb on + strand at 649.707 kb on + strand at 649.707 kb on + strand at 649.708 kb on - strand at 649.708 kb on - strand at 649.711 kb on + strand at 649.712 kb on - strand at 649.712 kb on - strand at 649.758 kb on + strand, within SM_b21028 at 649.825 kb on + strand, within SM_b21028 at 649.845 kb on + strand, within SM_b21028 at 649.846 kb on - strand, within SM_b21028 at 649.900 kb on + strand at 649.900 kb on + strand at 649.901 kb on - strand at 649.925 kb on - strand at 649.929 kb on - strand at 649.936 kb on - strand at 649.936 kb on - strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.978 kb on - strand at 649.978 kb on - strand at 650.129 kb on - strand, within SM_b21029 at 650.136 kb on + strand, within SM_b21029 at 650.214 kb on - strand, within SM_b21029 at 650.281 kb on - strand, within SM_b21029 at 650.345 kb on + strand, within SM_b21029 at 650.346 kb on - strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.500 kb on + strand at 650.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 647,820 - -0.2 647,934 + -0.8 647,935 - +0.7 647,935 - -1.8 647,935 - +1.1 647,960 + -0.0 647,961 - -1.4 648,062 + SM_b21026 0.78 +1.1 648,062 + SM_b21026 0.78 -0.8 648,062 + SM_b21026 0.78 +0.7 648,063 - SM_b21026 0.79 -1.5 648,096 + -1.3 648,097 - +0.2 648,097 - +0.1 648,097 - -0.5 648,099 + -0.4 648,100 - +0.6 648,135 + +0.1 648,135 + -0.1 648,136 - -0.1 648,214 + -0.1 648,223 + +0.3 648,223 + -0.6 648,224 - -0.3 648,285 - +0.4 648,296 + +0.1 648,297 - -0.5 648,297 - -1.1 648,539 + -0.0 648,539 + -0.8 648,540 - -0.8 648,593 - -0.6 648,593 - -0.6 648,594 + -0.6 648,594 + -0.1 648,595 - -0.5 648,635 - -0.4 648,699 + -0.2 648,731 + -0.6 648,756 + -1.0 648,773 + -2.5 648,796 + +0.4 648,796 + -0.5 648,861 + SM_b21027 0.10 -0.1 648,861 + SM_b21027 0.10 -0.6 648,861 + SM_b21027 0.10 -0.2 648,861 + SM_b21027 0.10 +0.3 648,862 - SM_b21027 0.10 -0.3 648,862 - SM_b21027 0.10 +0.1 648,877 - SM_b21027 0.12 -0.9 648,879 - SM_b21027 0.13 +0.4 648,879 - SM_b21027 0.13 +0.4 649,172 - SM_b21027 0.54 -0.8 649,172 - SM_b21027 0.54 +4.7 649,172 - SM_b21027 0.54 +0.3 649,175 + SM_b21027 0.54 +0.2 649,176 - SM_b21027 0.54 -1.1 649,176 - SM_b21027 0.54 +0.3 649,176 - SM_b21027 0.54 -0.2 649,420 + SM_b21027 0.88 -0.2 649,447 + +0.7 649,560 + +0.1 649,560 + +0.8 649,560 + +0.4 649,561 - -0.8 649,611 - +0.7 649,644 + -0.5 649,645 - -0.1 649,654 + -0.5 649,657 - +0.5 649,657 - +0.2 649,707 + -0.2 649,707 + -0.1 649,707 + +0.2 649,708 - -2.1 649,708 - -0.3 649,711 + -0.8 649,712 - +0.4 649,712 - +1.6 649,758 + SM_b21028 0.24 +0.2 649,825 + SM_b21028 0.65 +0.5 649,845 + SM_b21028 0.78 -0.8 649,846 - SM_b21028 0.78 -0.9 649,900 + +0.5 649,900 + +0.2 649,901 - +0.3 649,925 - -0.8 649,929 - -2.7 649,936 - +1.1 649,936 - -2.0 649,977 + +0.1 649,977 + -0.1 649,977 + +0.9 649,977 + +0.4 649,977 + -0.3 649,978 - -0.3 649,978 - +0.5 650,129 - SM_b21029 0.29 +0.1 650,136 + SM_b21029 0.30 -0.2 650,214 - SM_b21029 0.45 +1.1 650,281 - SM_b21029 0.58 +0.5 650,345 + SM_b21029 0.70 +0.5 650,346 - SM_b21029 0.70 +0.4 650,436 + SM_b21029 0.87 +1.1 650,436 + SM_b21029 0.87 +0.5 650,437 - SM_b21029 0.87 +0.6 650,437 - SM_b21029 0.87 +0.9 650,500 + -0.1 650,500 + -0.3
Or see this region's nucleotide sequence