Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20946

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20945 and SM_b20946 are separated by 52 nucleotidesSM_b20946 and SM_b20947 are separated by 772 nucleotides SM_b20945: SM_b20945 - hypothetical protein, at 1,171,541 to 1,172,806 _b20945 SM_b20946: SM_b20946 - galactosyltransferase, at 1,172,859 to 1,173,539 _b20946 SM_b20947: SM_b20947 - posttranscriptional regulator, repressor protein, at 1,174,312 to 1,174,608 _b20947 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -3 -2 -1 0 1at 1172.765 kb on - strandat 1172.945 kb on - strand, within SM_b20946at 1172.945 kb on - strand, within SM_b20946at 1172.945 kb on - strand, within SM_b20946at 1172.974 kb on + strand, within SM_b20946at 1173.037 kb on + strand, within SM_b20946at 1173.158 kb on + strand, within SM_b20946at 1173.230 kb on - strand, within SM_b20946at 1173.291 kb on - strand, within SM_b20946at 1173.291 kb on - strand, within SM_b20946at 1173.346 kb on + strand, within SM_b20946at 1173.347 kb on - strand, within SM_b20946at 1173.347 kb on - strand, within SM_b20946at 1173.461 kb on + strand, within SM_b20946at 1173.501 kb on - strandat 1173.555 kb on + strandat 1173.556 kb on - strandat 1173.596 kb on - strandat 1173.606 kb on + strandat 1173.736 kb on + strandat 1173.741 kb on + strandat 1173.741 kb on + strandat 1173.788 kb on - strandat 1173.805 kb on - strandat 1173.810 kb on + strandat 1173.813 kb on + strandat 1173.999 kb on + strandat 1173.999 kb on + strandat 1174.000 kb on - strandat 1174.046 kb on + strandat 1174.047 kb on - strandat 1174.047 kb on - strandat 1174.047 kb on - strandat 1174.179 kb on + strandat 1174.180 kb on - strandat 1174.180 kb on - strandat 1174.180 kb on - strandat 1174.200 kb on - strandat 1174.232 kb on + strandat 1174.235 kb on + strandat 1174.237 kb on + strandat 1174.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,172,765 - +0.3
1,172,945 - SM_b20946 0.13 -2.8
1,172,945 - SM_b20946 0.13 +0.1
1,172,945 - SM_b20946 0.13 +0.2
1,172,974 + SM_b20946 0.17 -2.0
1,173,037 + SM_b20946 0.26 -0.5
1,173,158 + SM_b20946 0.44 +1.0
1,173,230 - SM_b20946 0.54 -0.5
1,173,291 - SM_b20946 0.63 -0.8
1,173,291 - SM_b20946 0.63 -1.0
1,173,346 + SM_b20946 0.72 -0.4
1,173,347 - SM_b20946 0.72 -1.2
1,173,347 - SM_b20946 0.72 -1.3
1,173,461 + SM_b20946 0.88 -0.3
1,173,501 - +0.8
1,173,555 + +0.0
1,173,556 - -0.7
1,173,596 - -1.0
1,173,606 + -2.6
1,173,736 + -1.0
1,173,741 + -0.2
1,173,741 + +0.1
1,173,788 - -0.1
1,173,805 - -1.4
1,173,810 + +0.1
1,173,813 + -0.7
1,173,999 + +1.5
1,173,999 + -0.8
1,174,000 - -1.2
1,174,046 + -0.1
1,174,047 - -0.7
1,174,047 - +0.0
1,174,047 - -1.5
1,174,179 + +1.1
1,174,180 - -0.3
1,174,180 - +0.0
1,174,180 - -0.2
1,174,200 - +1.1
1,174,232 + +0.4
1,174,235 + +0.2
1,174,237 + +0.1
1,174,237 + -0.7

Or see this region's nucleotide sequence