Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20702

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20701 and SM_b20702 are separated by 182 nucleotidesSM_b20702 and SM_b20703 are separated by 51 nucleotidesSM_b20703 and SM_b20704 are separated by 276 nucleotides SM_b20701: SM_b20701 - hypothetical protein, at 1,502,024 to 1,502,776 _b20701 SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623 _b20702 SM_b20703: SM_b20703 - hypothetical protein, at 1,504,675 to 1,505,184 _b20703 SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921 _b20704 Position (kb) 1502 1503 1504 1505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1502.404 kb on - strand, within SM_b20701at 1502.969 kb on - strandat 1502.975 kb on + strandat 1502.975 kb on + strandat 1502.975 kb on + strandat 1502.976 kb on - strandat 1502.978 kb on + strandat 1502.978 kb on + strandat 1503.049 kb on + strandat 1503.050 kb on - strandat 1503.050 kb on - strandat 1503.050 kb on - strandat 1503.380 kb on + strand, within SM_b20702at 1503.491 kb on - strand, within SM_b20702at 1503.576 kb on + strand, within SM_b20702at 1503.576 kb on + strand, within SM_b20702at 1503.577 kb on - strand, within SM_b20702at 1503.580 kb on + strand, within SM_b20702at 1503.583 kb on - strand, within SM_b20702at 1503.583 kb on - strand, within SM_b20702at 1503.634 kb on + strand, within SM_b20702at 1503.634 kb on + strand, within SM_b20702at 1503.635 kb on - strand, within SM_b20702at 1503.635 kb on - strand, within SM_b20702at 1503.874 kb on + strand, within SM_b20702at 1503.875 kb on - strand, within SM_b20702at 1503.877 kb on + strand, within SM_b20702at 1503.877 kb on + strand, within SM_b20702at 1503.877 kb on + strand, within SM_b20702at 1503.878 kb on - strandat 1503.985 kb on + strand, within SM_b20702at 1504.007 kb on - strand, within SM_b20702at 1504.055 kb on + strand, within SM_b20702at 1504.282 kb on - strandat 1504.443 kb on - strand, within SM_b20702at 1504.443 kb on - strand, within SM_b20702at 1504.645 kb on + strandat 1504.676 kb on + strandat 1504.676 kb on + strandat 1504.677 kb on - strandat 1504.685 kb on + strandat 1504.685 kb on + strandat 1504.685 kb on + strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1505.043 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.079 kb on - strand, within SM_b20703at 1505.155 kb on + strandat 1505.156 kb on - strandat 1505.156 kb on - strandat 1505.214 kb on - strandat 1505.265 kb on + strandat 1505.352 kb on - strandat 1505.468 kb on + strandat 1505.468 kb on + strandat 1505.468 kb on + strandat 1505.525 kb on + strandat 1505.590 kb on + strandat 1505.590 kb on + strandat 1505.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,502,404 - SM_b20701 0.50 +0.4
1,502,969 - -0.5
1,502,975 + +0.3
1,502,975 + +0.3
1,502,975 + -0.3
1,502,976 - -0.5
1,502,978 + +0.2
1,502,978 + -0.3
1,503,049 + -0.4
1,503,050 - +1.8
1,503,050 - -0.4
1,503,050 - -0.3
1,503,380 + SM_b20702 0.25 -2.2
1,503,491 - SM_b20702 0.32 -0.7
1,503,576 + SM_b20702 0.37 -0.5
1,503,576 + SM_b20702 0.37 -0.9
1,503,577 - SM_b20702 0.37 +0.3
1,503,580 + SM_b20702 0.37 -0.0
1,503,583 - SM_b20702 0.37 -0.3
1,503,583 - SM_b20702 0.37 +0.4
1,503,634 + SM_b20702 0.41 -0.3
1,503,634 + SM_b20702 0.41 -0.3
1,503,635 - SM_b20702 0.41 -0.1
1,503,635 - SM_b20702 0.41 -0.0
1,503,874 + SM_b20702 0.55 -0.4
1,503,875 - SM_b20702 0.55 -1.0
1,503,877 + SM_b20702 0.55 -2.3
1,503,877 + SM_b20702 0.55 +0.1
1,503,877 + SM_b20702 0.55 -1.0
1,503,878 - +0.7
1,503,985 + SM_b20702 0.62 -0.1
1,504,007 - SM_b20702 0.63 -0.5
1,504,055 + SM_b20702 0.66 +0.4
1,504,282 - +0.9
1,504,443 - SM_b20702 0.89 -1.3
1,504,443 - SM_b20702 0.89 -1.8
1,504,645 + -0.6
1,504,676 + -0.8
1,504,676 + -0.7
1,504,677 - -1.5
1,504,685 + -0.9
1,504,685 + -0.8
1,504,685 + -1.4
1,504,686 - +1.8
1,504,686 - -0.1
1,504,686 - +0.0
1,504,686 - -0.2
1,504,686 - -1.3
1,505,043 + SM_b20703 0.72 +0.8
1,505,078 + SM_b20703 0.79 -0.6
1,505,078 + SM_b20703 0.79 +0.6
1,505,078 + SM_b20703 0.79 -0.5
1,505,079 - SM_b20703 0.79 -0.9
1,505,155 + +0.0
1,505,156 - -2.2
1,505,156 - +0.6
1,505,214 - -0.2
1,505,265 + -1.3
1,505,352 - +1.3
1,505,468 + +0.8
1,505,468 + +0.7
1,505,468 + -0.2
1,505,525 + -3.1
1,505,590 + +0.7
1,505,590 + +0.5
1,505,590 + -1.5

Or see this region's nucleotide sequence