Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20671

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20670 and SM_b20671 are separated by 116 nucleotidesSM_b20671 and SM_b20672 overlap by 4 nucleotides SM_b20670: SM_b20670 - hypothetical protein, at 1,470,644 to 1,471,921 _b20670 SM_b20671: SM_b20671 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,472,038 to 1,473,006 _b20671 SM_b20672: SM_b20672 - sugar uptake ABC transporter permease, at 1,473,003 to 1,474,325 _b20672 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -2 -1 0 1at 1471.255 kb on - strand, within SM_b20670at 1471.350 kb on + strand, within SM_b20670at 1471.480 kb on + strand, within SM_b20670at 1471.481 kb on - strand, within SM_b20670at 1471.481 kb on - strand, within SM_b20670at 1471.635 kb on - strand, within SM_b20670at 1472.039 kb on + strandat 1472.303 kb on + strand, within SM_b20671at 1472.303 kb on + strand, within SM_b20671at 1472.304 kb on - strand, within SM_b20671at 1472.327 kb on + strand, within SM_b20671at 1472.329 kb on + strand, within SM_b20671at 1472.330 kb on - strand, within SM_b20671at 1472.378 kb on + strand, within SM_b20671at 1472.378 kb on + strand, within SM_b20671at 1472.379 kb on - strand, within SM_b20671at 1472.379 kb on - strand, within SM_b20671at 1472.506 kb on + strand, within SM_b20671at 1472.507 kb on - strand, within SM_b20671at 1472.517 kb on + strand, within SM_b20671at 1472.562 kb on - strand, within SM_b20671at 1472.615 kb on + strand, within SM_b20671at 1472.616 kb on - strand, within SM_b20671at 1472.797 kb on + strand, within SM_b20671at 1473.027 kb on + strandat 1473.128 kb on - strandat 1473.379 kb on + strand, within SM_b20672at 1473.379 kb on + strand, within SM_b20672at 1473.421 kb on + strand, within SM_b20672at 1473.421 kb on + strand, within SM_b20672at 1473.422 kb on - strand, within SM_b20672at 1473.422 kb on - strand, within SM_b20672at 1473.422 kb on - strand, within SM_b20672at 1473.493 kb on + strand, within SM_b20672at 1473.499 kb on + strand, within SM_b20672at 1473.500 kb on - strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.561 kb on + strand, within SM_b20672at 1473.562 kb on - strand, within SM_b20672at 1473.605 kb on + strand, within SM_b20672at 1473.605 kb on + strand, within SM_b20672at 1473.636 kb on - strand, within SM_b20672at 1473.929 kb on + strand, within SM_b20672at 1473.930 kb on - strand, within SM_b20672at 1473.978 kb on + strand, within SM_b20672at 1473.978 kb on + strand, within SM_b20672at 1473.979 kb on - strand, within SM_b20672

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,471,255 - SM_b20670 0.48 -0.9
1,471,350 + SM_b20670 0.55 -0.5
1,471,480 + SM_b20670 0.65 +0.4
1,471,481 - SM_b20670 0.65 -2.1
1,471,481 - SM_b20670 0.65 +1.0
1,471,635 - SM_b20670 0.78 -1.0
1,472,039 + -0.0
1,472,303 + SM_b20671 0.27 -0.1
1,472,303 + SM_b20671 0.27 -0.9
1,472,304 - SM_b20671 0.27 -0.4
1,472,327 + SM_b20671 0.30 +0.1
1,472,329 + SM_b20671 0.30 +0.1
1,472,330 - SM_b20671 0.30 -0.9
1,472,378 + SM_b20671 0.35 -1.1
1,472,378 + SM_b20671 0.35 -0.8
1,472,379 - SM_b20671 0.35 +0.0
1,472,379 - SM_b20671 0.35 +0.3
1,472,506 + SM_b20671 0.48 -0.7
1,472,507 - SM_b20671 0.48 -0.2
1,472,517 + SM_b20671 0.49 -1.9
1,472,562 - SM_b20671 0.54 -0.1
1,472,615 + SM_b20671 0.60 -0.2
1,472,616 - SM_b20671 0.60 -0.5
1,472,797 + SM_b20671 0.78 +0.1
1,473,027 + +0.1
1,473,128 - +0.4
1,473,379 + SM_b20672 0.28 -0.2
1,473,379 + SM_b20672 0.28 -0.6
1,473,421 + SM_b20672 0.32 +0.4
1,473,421 + SM_b20672 0.32 -1.1
1,473,422 - SM_b20672 0.32 -0.7
1,473,422 - SM_b20672 0.32 -0.1
1,473,422 - SM_b20672 0.32 +1.2
1,473,493 + SM_b20672 0.37 -1.1
1,473,499 + SM_b20672 0.37 -0.7
1,473,500 - SM_b20672 0.38 +0.4
1,473,561 + SM_b20672 0.42 -0.2
1,473,561 + SM_b20672 0.42 +1.1
1,473,561 + SM_b20672 0.42 +0.7
1,473,561 + SM_b20672 0.42 +0.0
1,473,562 - SM_b20672 0.42 -0.2
1,473,605 + SM_b20672 0.46 +1.0
1,473,605 + SM_b20672 0.46 -1.5
1,473,636 - SM_b20672 0.48 +0.9
1,473,929 + SM_b20672 0.70 +0.3
1,473,930 - SM_b20672 0.70 -0.1
1,473,978 + SM_b20672 0.74 -1.0
1,473,978 + SM_b20672 0.74 -0.3
1,473,979 - SM_b20672 0.74 +1.0

Or see this region's nucleotide sequence