Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20558 and SM_b20559 are separated by 132 nucleotides SM_b20559 and SM_b20560 are separated by 126 nucleotides
SM_b20558: SM_b20558 - hypothetical protein, at 583,428 to 583,838
_b20558
SM_b20559: SM_b20559 - hypothetical protein, at 583,971 to 584,555
_b20559
SM_b20560: SM_b20560 - hypothetical protein, at 584,682 to 584,903
_b20560
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 582.979 kb on - strand at 583.075 kb on + strand at 583.136 kb on + strand at 583.190 kb on - strand at 583.190 kb on - strand at 583.429 kb on + strand at 583.429 kb on + strand at 583.456 kb on + strand at 583.456 kb on + strand at 583.540 kb on - strand, within SM_b20558 at 583.602 kb on - strand, within SM_b20558 at 583.602 kb on - strand, within SM_b20558 at 583.602 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.912 kb on + strand at 583.913 kb on - strand at 583.913 kb on - strand at 583.913 kb on - strand at 583.913 kb on - strand at 583.967 kb on + strand at 583.967 kb on + strand at 583.968 kb on - strand at 584.017 kb on + strand at 584.054 kb on + strand, within SM_b20559 at 584.055 kb on - strand, within SM_b20559 at 584.222 kb on + strand, within SM_b20559 at 584.463 kb on + strand, within SM_b20559 at 584.473 kb on + strand, within SM_b20559 at 584.473 kb on + strand, within SM_b20559 at 584.474 kb on - strand, within SM_b20559 at 584.504 kb on - strand at 584.526 kb on + strand at 584.527 kb on - strand at 584.544 kb on + strand at 584.545 kb on - strand at 584.620 kb on + strand at 584.621 kb on - strand at 584.680 kb on + strand at 584.886 kb on + strand at 584.887 kb on - strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.900 kb on - strand at 584.900 kb on - strand at 584.900 kb on - strand at 584.900 kb on - strand at 585.035 kb on + strand at 585.120 kb on + strand at 585.120 kb on + strand at 585.121 kb on - strand at 585.203 kb on - strand at 585.203 kb on - strand at 585.387 kb on + strand at 585.387 kb on + strand at 585.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 582,979 - -0.2 583,075 + -0.9 583,136 + +0.7 583,190 - +1.0 583,190 - -1.3 583,429 + +0.1 583,429 + +0.3 583,456 + +0.2 583,456 + -0.2 583,540 - SM_b20558 0.27 +0.3 583,602 - SM_b20558 0.42 -0.2 583,602 - SM_b20558 0.42 +0.1 583,602 - SM_b20558 0.42 -1.6 583,663 - SM_b20558 0.57 -1.1 583,663 - SM_b20558 0.57 -0.9 583,663 - SM_b20558 0.57 -0.5 583,663 - SM_b20558 0.57 -0.3 583,912 + +0.1 583,913 - -0.6 583,913 - -1.2 583,913 - -0.1 583,913 - +0.0 583,967 + -0.5 583,967 + +4.3 583,968 - -0.8 584,017 + -0.5 584,054 + SM_b20559 0.14 -0.8 584,055 - SM_b20559 0.14 -0.1 584,222 + SM_b20559 0.43 -0.5 584,463 + SM_b20559 0.84 +0.1 584,473 + SM_b20559 0.86 -0.4 584,473 + SM_b20559 0.86 -0.2 584,474 - SM_b20559 0.86 -1.7 584,504 - +0.0 584,526 + +0.9 584,527 - -1.9 584,544 + -0.7 584,545 - -1.5 584,620 + +2.1 584,621 - -1.0 584,680 + -0.4 584,886 + +1.1 584,887 - -0.0 584,899 + -0.9 584,899 + +0.4 584,899 + -0.3 584,899 + -0.2 584,899 + -0.2 584,900 - -0.5 584,900 - -0.4 584,900 - -1.2 584,900 - -0.4 585,035 + -0.1 585,120 + +0.6 585,120 + +0.3 585,121 - +0.1 585,203 - +0.1 585,203 - -1.0 585,387 + +0.6 585,387 + +0.0 585,497 - +0.1
Or see this region's nucleotide sequence