Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20551 and SM_b20552 are separated by 751 nucleotides SM_b20552 and SM_b20553 are separated by 20 nucleotides SM_b20553 and SM_b20554 are separated by 357 nucleotides
SM_b20551: SM_b20551 - hypothetical protein, at 576,952 to 577,398
_b20551
SM_b20552: SM_b20552 - hypothetical protein, at 578,150 to 578,881
_b20552
SM_b20553: SM_b20553 - hypothetical protein, at 578,902 to 579,096
_b20553
SM_b20554: SM_b20554 - hypothetical protein, at 579,454 to 579,963
_b20554
Position (kb) 578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.178 kb on + strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.189 kb on - strand, within SM_b20551 at 577.270 kb on + strand, within SM_b20551 at 577.409 kb on + strand at 577.409 kb on + strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.460 kb on - strand at 577.524 kb on - strand at 577.561 kb on + strand at 577.561 kb on + strand at 577.562 kb on - strand at 577.648 kb on - strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.719 kb on - strand at 577.719 kb on - strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.721 kb on - strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.742 kb on + strand at 577.742 kb on + strand at 577.805 kb on + strand at 577.806 kb on - strand at 577.823 kb on - strand at 577.881 kb on + strand at 577.881 kb on + strand at 577.882 kb on - strand at 577.948 kb on - strand at 578.038 kb on + strand at 578.038 kb on + strand at 578.038 kb on + strand at 578.039 kb on - strand at 578.039 kb on - strand at 578.148 kb on + strand at 578.148 kb on + strand at 578.149 kb on - strand at 578.149 kb on - strand at 578.181 kb on + strand at 578.229 kb on + strand, within SM_b20552 at 578.230 kb on - strand, within SM_b20552 at 578.315 kb on + strand, within SM_b20552 at 578.328 kb on + strand, within SM_b20552 at 578.329 kb on - strand, within SM_b20552 at 578.335 kb on - strand, within SM_b20552 at 578.537 kb on + strand, within SM_b20552 at 578.599 kb on + strand, within SM_b20552 at 578.600 kb on - strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.735 kb on + strand, within SM_b20552 at 578.779 kb on - strand, within SM_b20552 at 578.981 kb on + strand, within SM_b20553 at 579.010 kb on - strand, within SM_b20553 at 579.056 kb on + strand, within SM_b20553 at 579.091 kb on + strand at 579.091 kb on + strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.218 kb on - strand at 579.219 kb on + strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.248 kb on + strand at 579.249 kb on - strand at 579.256 kb on - strand at 579.256 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.298 kb on - strand at 579.298 kb on - strand at 579.436 kb on + strand at 579.437 kb on - strand at 579.467 kb on + strand at 579.497 kb on + strand at 579.497 kb on + strand at 579.498 kb on - strand at 579.509 kb on - strand, within SM_b20554 at 579.509 kb on - strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.627 kb on + strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.696 kb on - strand, within SM_b20554
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 577,178 + SM_b20551 0.51 +0.4 577,179 - SM_b20551 0.51 +0.1 577,179 - SM_b20551 0.51 -0.2 577,189 - SM_b20551 0.53 +0.3 577,270 + SM_b20551 0.71 +1.3 577,409 + -0.7 577,409 + -0.0 577,410 - +0.7 577,410 - +0.8 577,410 - +0.8 577,410 - +0.6 577,460 - -0.1 577,524 - +0.1 577,561 + +0.7 577,561 + -0.7 577,562 - +0.1 577,648 - +0.0 577,718 + +1.0 577,718 + +0.3 577,718 + +0.2 577,719 - -0.7 577,719 - -0.0 577,720 + +0.0 577,720 + -2.8 577,720 + -0.2 577,720 + -1.6 577,721 - -0.4 577,722 + -0.2 577,722 + -2.1 577,722 + +0.1 577,723 - +0.8 577,723 - -0.5 577,723 - -0.4 577,742 + +1.7 577,742 + +1.5 577,805 + -0.5 577,806 - -0.8 577,823 - -0.3 577,881 + -0.7 577,881 + -1.2 577,882 - +0.3 577,948 - -0.4 578,038 + +0.0 578,038 + +0.3 578,038 + -0.3 578,039 - +0.0 578,039 - +0.4 578,148 + -1.2 578,148 + -0.3 578,149 - -0.6 578,149 - -0.4 578,181 + -0.6 578,229 + SM_b20552 0.11 -1.0 578,230 - SM_b20552 0.11 -1.0 578,315 + SM_b20552 0.23 -0.0 578,328 + SM_b20552 0.24 -0.0 578,329 - SM_b20552 0.24 -0.5 578,335 - SM_b20552 0.25 -2.0 578,537 + SM_b20552 0.53 +1.0 578,599 + SM_b20552 0.61 +0.2 578,600 - SM_b20552 0.61 -0.8 578,645 + SM_b20552 0.68 +0.5 578,645 + SM_b20552 0.68 -0.8 578,706 + SM_b20552 0.76 -0.1 578,706 + SM_b20552 0.76 -1.0 578,735 + SM_b20552 0.80 +0.1 578,779 - SM_b20552 0.86 -1.1 578,981 + SM_b20553 0.41 +0.4 579,010 - SM_b20553 0.55 -0.0 579,056 + SM_b20553 0.79 -0.1 579,091 + -0.8 579,091 + -0.2 579,092 - +1.0 579,092 - +0.4 579,092 - -1.5 579,106 + -0.5 579,106 + +0.8 579,217 + +0.9 579,217 + +0.3 579,217 + +0.3 579,218 - +1.7 579,219 + +0.4 579,220 - -0.2 579,220 - -0.4 579,220 - -1.4 579,220 - +0.4 579,248 + -0.1 579,249 - +0.1 579,256 - -0.1 579,256 - -0.4 579,291 - +1.0 579,291 - +0.9 579,291 - +0.4 579,291 - +1.2 579,291 - -0.5 579,297 + +0.9 579,297 + -0.2 579,297 + -0.4 579,297 + -0.2 579,298 - +0.1 579,298 - -1.2 579,436 + -0.0 579,437 - +0.3 579,467 + -0.6 579,497 + +0.0 579,497 + -0.2 579,498 - +0.1 579,509 - SM_b20554 0.11 -0.6 579,509 - SM_b20554 0.11 -1.7 579,619 + SM_b20554 0.32 -0.5 579,619 + SM_b20554 0.32 +1.9 579,619 + +1.4 579,620 - SM_b20554 0.33 -0.4 579,620 - SM_b20554 0.33 +0.5 579,620 - SM_b20554 0.33 -2.0 579,627 + SM_b20554 0.34 +2.1 579,628 - SM_b20554 0.34 -0.8 579,628 - SM_b20554 0.34 +0.1 579,696 - SM_b20554 0.47 -0.2
Or see this region's nucleotide sequence