Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20533 and SM_b20534 are separated by 604 nucleotides SM_b20534 and SM_b20535 overlap by 4 nucleotides
SM_b20533: SM_b20533 - hypothetical protein, at 556,745 to 556,948
_b20533
SM_b20534: SM_b20534 - hypothetical protein, at 557,553 to 558,362
_b20534
SM_b20535: SM_b20535 - dehydrogenase, at 558,359 to 559,369
_b20535
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 556.582 kb on + strand at 556.582 kb on + strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.595 kb on - strand at 556.636 kb on + strand at 556.646 kb on - strand at 556.687 kb on - strand at 556.791 kb on - strand, within SM_b20533 at 556.918 kb on + strand, within SM_b20533 at 556.919 kb on - strand, within SM_b20533 at 556.919 kb on - strand, within SM_b20533 at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.962 kb on - strand at 556.962 kb on - strand at 556.962 kb on - strand at 556.965 kb on + strand at 556.966 kb on - strand at 556.966 kb on - strand at 557.173 kb on + strand at 557.214 kb on + strand at 557.235 kb on + strand at 557.264 kb on + strand at 557.264 kb on + strand at 557.264 kb on + strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.392 kb on + strand at 557.393 kb on - strand at 557.393 kb on - strand at 557.434 kb on - strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.490 kb on + strand at 557.490 kb on + strand at 557.491 kb on - strand at 557.491 kb on - strand at 557.529 kb on + strand at 557.529 kb on + strand at 557.561 kb on + strand at 557.731 kb on + strand, within SM_b20534 at 557.870 kb on - strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.902 kb on - strand, within SM_b20534 at 557.903 kb on + strand, within SM_b20534 at 557.903 kb on + strand, within SM_b20534 at 557.904 kb on - strand, within SM_b20534 at 558.041 kb on - strand, within SM_b20534 at 558.160 kb on + strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.169 kb on + strand, within SM_b20534 at 558.170 kb on - strand, within SM_b20534 at 558.170 kb on - strand, within SM_b20534 at 558.487 kb on + strand, within SM_b20535 at 558.503 kb on + strand, within SM_b20535 at 558.519 kb on + strand, within SM_b20535 at 558.520 kb on - strand, within SM_b20535 at 558.665 kb on - strand, within SM_b20535 at 558.754 kb on + strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.774 kb on - strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 559.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 556,582 + -1.2 556,582 + -0.3 556,583 - -2.0 556,583 - +0.4 556,583 - -2.0 556,595 - -0.0 556,636 + +0.0 556,646 - -0.3 556,687 - -2.5 556,791 - SM_b20533 0.23 -0.4 556,918 + SM_b20533 0.85 -0.1 556,919 - SM_b20533 0.85 -0.8 556,919 - SM_b20533 0.85 +0.5 556,961 + +0.2 556,961 + +0.1 556,961 + +0.5 556,961 + +0.2 556,961 + +0.3 556,961 + +0.9 556,962 - -2.1 556,962 - +0.2 556,962 - -1.4 556,965 + -0.5 556,966 - +0.4 556,966 - -0.5 557,173 + +0.3 557,214 + +0.1 557,235 + +0.0 557,264 + -1.0 557,264 + -1.8 557,264 + -2.5 557,265 - -1.5 557,265 - -0.3 557,265 - +1.4 557,265 - -0.4 557,265 - -0.3 557,392 + +0.9 557,393 - -0.2 557,393 - +0.4 557,434 - -0.2 557,440 + +0.1 557,440 + +0.6 557,440 + -0.4 557,440 + +0.1 557,441 - +0.2 557,441 - +0.3 557,441 - +0.8 557,441 - +1.3 557,490 + -0.8 557,490 + -0.3 557,491 - +0.3 557,491 - +0.6 557,529 + -0.0 557,529 + +0.4 557,561 + -0.5 557,731 + SM_b20534 0.22 -0.5 557,870 - SM_b20534 0.39 +0.4 557,875 + SM_b20534 0.40 -0.0 557,875 + SM_b20534 0.40 +0.2 557,875 + SM_b20534 0.40 -0.1 557,876 - SM_b20534 0.40 +0.5 557,876 - SM_b20534 0.40 -0.6 557,876 - SM_b20534 0.40 -0.2 557,902 - SM_b20534 0.43 -0.5 557,903 + SM_b20534 0.43 +0.5 557,903 + SM_b20534 0.43 +1.7 557,904 - SM_b20534 0.43 -0.7 558,041 - SM_b20534 0.60 +0.6 558,160 + SM_b20534 0.75 -0.1 558,161 - SM_b20534 0.75 +0.5 558,161 - SM_b20534 0.75 +0.5 558,161 - SM_b20534 0.75 +3.7 558,161 - SM_b20534 0.75 -1.2 558,169 + SM_b20534 0.76 +0.7 558,170 - SM_b20534 0.76 +1.7 558,170 - SM_b20534 0.76 +4.3 558,487 + SM_b20535 0.13 -0.1 558,503 + SM_b20535 0.14 -0.7 558,519 + SM_b20535 0.16 -0.8 558,520 - SM_b20535 0.16 -0.9 558,665 - SM_b20535 0.30 +0.7 558,754 + SM_b20535 0.39 -0.3 558,755 - SM_b20535 0.39 +0.4 558,755 - SM_b20535 0.39 -0.5 558,774 - SM_b20535 0.41 +0.9 558,816 + SM_b20535 0.45 +0.7 558,816 + SM_b20535 0.45 -0.4 558,966 + SM_b20535 0.60 +0.1 558,966 + SM_b20535 0.60 -0.9 559,321 - +0.4
Or see this region's nucleotide sequence