Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20399 and SM_b20400 are separated by 9 nucleotides SM_b20400 and SM_b20401 are separated by 26 nucleotides SM_b20401 and SM_b20402 are separated by 143 nucleotides SM_b20402 and SM_b20403 are separated by 2 nucleotides SM_b20403 and SM_b20404 overlap by 1 nucleotides
SM_b20399: SM_b20399 - hypothetical protein, at 413,764 to 414,354
_b20399
SM_b20400: SM_b20400 - hypothetical protein, at 414,364 to 414,627
_b20400
SM_b20401: SM_b20401 - hypothetical protein, at 414,654 to 414,827
_b20401
SM_b20402: SM_b20402 - alcohol dehydrogenase cytochrome c subunit precursor, at 414,971 to 416,359
_b20402
SM_b20403: SM_b20403 - oxidoreductase subunit protein, at 416,362 to 416,859
_b20403
SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099
_b20404
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 414.076 kb on + strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.422 kb on + strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.618 kb on - strand at 414.737 kb on - strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.740 kb on - strand, within SM_b20401 at 414.740 kb on - strand, within SM_b20401 at 414.740 kb on - strand, within SM_b20401 at 415.038 kb on + strand at 415.388 kb on + strand, within SM_b20402 at 415.556 kb on + strand, within SM_b20402 at 415.595 kb on - strand, within SM_b20402 at 415.670 kb on + strand, within SM_b20402 at 415.730 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.842 kb on - strand, within SM_b20402 at 415.943 kb on - strand, within SM_b20402 at 415.995 kb on - strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.288 kb on + strand at 416.288 kb on + strand at 416.288 kb on + strand at 416.289 kb on - strand at 416.429 kb on - strand, within SM_b20403 at 416.429 kb on - strand, within SM_b20403 at 416.657 kb on - strand, within SM_b20403 at 416.773 kb on - strand, within SM_b20403
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 414,076 + SM_b20399 0.53 +0.7 414,077 - SM_b20399 0.53 -0.1 414,077 - SM_b20399 0.53 +0.0 414,232 + SM_b20399 0.79 +0.4 414,232 + SM_b20399 0.79 -0.7 414,233 - SM_b20399 0.79 -0.4 414,233 - SM_b20399 0.79 -1.9 414,233 - SM_b20399 0.79 -1.1 414,285 - SM_b20399 0.88 -0.1 414,285 - SM_b20399 0.88 -0.8 414,422 + SM_b20400 0.22 +1.3 414,423 - SM_b20400 0.22 -0.8 414,423 - SM_b20400 0.22 -1.3 414,539 + SM_b20400 0.66 +0.1 414,539 + SM_b20400 0.66 +0.8 414,567 - SM_b20400 0.77 +0.1 414,567 - SM_b20400 0.77 -1.0 414,618 - +0.6 414,737 - SM_b20401 0.48 -0.7 414,739 + SM_b20401 0.49 +2.6 414,739 + SM_b20401 0.49 -0.6 414,739 + SM_b20401 0.49 -0.3 414,739 + SM_b20401 0.49 -0.7 414,740 - SM_b20401 0.49 +0.9 414,740 - SM_b20401 0.49 +0.8 414,740 - SM_b20401 0.49 -0.3 415,038 + +0.5 415,388 + SM_b20402 0.30 +0.1 415,556 + SM_b20402 0.42 -0.2 415,595 - SM_b20402 0.45 +0.2 415,670 + SM_b20402 0.50 +0.1 415,730 + SM_b20402 0.55 -0.8 415,841 + SM_b20402 0.63 +0.2 415,841 + SM_b20402 0.63 -0.5 415,841 + SM_b20402 0.63 +1.2 415,842 - SM_b20402 0.63 +1.7 415,943 - SM_b20402 0.70 -0.0 415,995 - SM_b20402 0.74 -0.1 416,210 + SM_b20402 0.89 -0.6 416,210 + SM_b20402 0.89 +2.3 416,210 + SM_b20402 0.89 +0.6 416,210 + SM_b20402 0.89 -2.3 416,210 + SM_b20402 0.89 +0.2 416,210 + SM_b20402 0.89 -0.2 416,211 - SM_b20402 0.89 +0.7 416,211 - SM_b20402 0.89 +0.0 416,211 - SM_b20402 0.89 +2.2 416,288 + -1.5 416,288 + +0.2 416,288 + -0.1 416,289 - +0.6 416,429 - SM_b20403 0.13 +0.6 416,429 - SM_b20403 0.13 -0.3 416,657 - SM_b20403 0.59 -0.0 416,773 - SM_b20403 0.83 +0.2
Or see this region's nucleotide sequence