Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20216

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20215 and SM_b20216 are separated by 140 nucleotidesSM_b20216 and SM_b20217 are separated by 217 nucleotides SM_b20215: SM_b20215 - transcriptional regulator, at 222,993 to 223,973 _b20215 SM_b20216: SM_b20216 - epoxide hydrolase, at 224,114 to 225,160 _b20216 SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043 _b20217 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1at 223.129 kb on - strand, within SM_b20215at 223.135 kb on + strand, within SM_b20215at 223.136 kb on - strand, within SM_b20215at 223.193 kb on + strand, within SM_b20215at 223.194 kb on - strand, within SM_b20215at 223.218 kb on + strand, within SM_b20215at 223.430 kb on + strand, within SM_b20215at 223.534 kb on - strand, within SM_b20215at 223.666 kb on - strand, within SM_b20215at 223.994 kb on + strandat 223.999 kb on + strandat 223.999 kb on + strandat 224.000 kb on - strandat 224.023 kb on + strandat 224.066 kb on + strandat 224.066 kb on + strandat 224.067 kb on - strandat 224.260 kb on + strand, within SM_b20216at 224.260 kb on + strand, within SM_b20216at 224.277 kb on + strand, within SM_b20216at 224.307 kb on + strand, within SM_b20216at 224.307 kb on + strand, within SM_b20216at 224.307 kb on + strand, within SM_b20216at 224.307 kb on + strand, within SM_b20216at 224.308 kb on - strand, within SM_b20216at 224.384 kb on + strand, within SM_b20216at 224.385 kb on - strand, within SM_b20216at 224.596 kb on + strand, within SM_b20216at 224.651 kb on + strand, within SM_b20216at 224.757 kb on - strand, within SM_b20216at 224.933 kb on + strand, within SM_b20216at 225.259 kb on + strandat 225.259 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.278 kb on - strandat 225.419 kb on + strandat 225.419 kb on + strandat 225.435 kb on - strandat 225.545 kb on + strand, within SM_b20217at 225.624 kb on + strand, within SM_b20217at 225.694 kb on + strand, within SM_b20217at 225.735 kb on + strand, within SM_b20217at 225.736 kb on - strand, within SM_b20217at 225.787 kb on - strand, within SM_b20217at 225.796 kb on - strand, within SM_b20217at 225.796 kb on - strand, within SM_b20217at 226.002 kb on + strandat 226.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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223,129 - SM_b20215 0.14 +0.1
223,135 + SM_b20215 0.14 -0.7
223,136 - SM_b20215 0.15 -0.2
223,193 + SM_b20215 0.20 -0.1
223,194 - SM_b20215 0.20 +0.1
223,218 + SM_b20215 0.23 -1.2
223,430 + SM_b20215 0.45 -0.9
223,534 - SM_b20215 0.55 +0.7
223,666 - SM_b20215 0.69 +0.3
223,994 + -0.4
223,999 + +0.9
223,999 + +0.1
224,000 - -0.8
224,023 + +0.0
224,066 + +0.3
224,066 + +1.2
224,067 - +0.4
224,260 + SM_b20216 0.14 -0.4
224,260 + SM_b20216 0.14 -0.3
224,277 + SM_b20216 0.16 -0.3
224,307 + SM_b20216 0.18 -0.6
224,307 + SM_b20216 0.18 -1.9
224,307 + SM_b20216 0.18 -0.8
224,307 + SM_b20216 0.18 -0.4
224,308 - SM_b20216 0.19 -0.7
224,384 + SM_b20216 0.26 +0.7
224,385 - SM_b20216 0.26 -0.8
224,596 + SM_b20216 0.46 -0.3
224,651 + SM_b20216 0.51 +0.7
224,757 - SM_b20216 0.61 -0.5
224,933 + SM_b20216 0.78 +0.1
225,259 + -0.2
225,259 + +0.2
225,277 + +1.1
225,277 + +0.5
225,277 + +0.7
225,277 + -0.7
225,277 + -0.1
225,278 - -0.1
225,419 + +0.3
225,419 + +0.2
225,435 - -0.4
225,545 + SM_b20217 0.25 +0.7
225,624 + SM_b20217 0.37 +0.9
225,694 + SM_b20217 0.47 +1.1
225,735 + SM_b20217 0.54 -0.7
225,736 - SM_b20217 0.54 -0.4
225,787 - SM_b20217 0.61 -0.3
225,796 - SM_b20217 0.63 -0.2
225,796 - SM_b20217 0.63 +1.4
226,002 + +0.3
226,142 - -0.0

Or see this region's nucleotide sequence