Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20128 and SM_b20129 are separated by 449 nucleotides SM_b20129 and SM_b20130 are separated by 50 nucleotides SM_b20130 and SM_b20131 overlap by 4 nucleotides
SM_b20128: SM_b20128 - deaminase, at 140,042 to 141,355
_b20128
SM_b20129: SM_b20129 - transcriptional regulator, at 141,805 to 142,584
_b20129
SM_b20130: SM_b20130 - dehydrogenase, at 142,635 to 143,498
_b20130
SM_b20131: SM_b20131 - oxidoreductase, at 143,495 to 143,980
_b20131
Position (kb) 141
142
143 Strain fitness (log2 ratio) -1
0
1 at 141.030 kb on + strand, within SM_b20128 at 141.031 kb on - strand, within SM_b20128 at 141.331 kb on + strand at 141.331 kb on + strand at 141.401 kb on + strand at 141.401 kb on + strand at 141.402 kb on - strand at 141.402 kb on - strand at 141.402 kb on - strand at 141.438 kb on + strand at 141.838 kb on + strand at 141.995 kb on + strand, within SM_b20129 at 141.995 kb on + strand, within SM_b20129 at 142.097 kb on + strand, within SM_b20129 at 142.097 kb on + strand, within SM_b20129 at 142.098 kb on - strand, within SM_b20129 at 142.210 kb on + strand, within SM_b20129 at 142.211 kb on - strand, within SM_b20129 at 142.447 kb on - strand, within SM_b20129 at 142.651 kb on - strand at 142.651 kb on - strand at 142.653 kb on + strand at 142.653 kb on + strand at 142.653 kb on + strand at 142.818 kb on - strand, within SM_b20130 at 142.821 kb on + strand, within SM_b20130 at 142.821 kb on + strand, within SM_b20130 at 142.821 kb on + strand, within SM_b20130 at 142.942 kb on + strand, within SM_b20130 at 142.943 kb on - strand, within SM_b20130 at 143.046 kb on + strand, within SM_b20130 at 143.140 kb on + strand, within SM_b20130 at 143.578 kb on - strand, within SM_b20131
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 141,030 + SM_b20128 0.75 -0.3 141,031 - SM_b20128 0.75 -0.1 141,331 + +0.7 141,331 + -1.4 141,401 + -0.7 141,401 + +0.4 141,402 - -0.5 141,402 - +0.5 141,402 - +0.3 141,438 + -0.6 141,838 + +0.1 141,995 + SM_b20129 0.24 +0.2 141,995 + SM_b20129 0.24 -0.8 142,097 + SM_b20129 0.37 +0.5 142,097 + SM_b20129 0.37 +0.2 142,098 - SM_b20129 0.38 +0.3 142,210 + SM_b20129 0.52 -1.6 142,211 - SM_b20129 0.52 -0.9 142,447 - SM_b20129 0.82 -1.0 142,651 - -0.3 142,651 - -0.7 142,653 + +0.2 142,653 + -1.7 142,653 + +1.1 142,818 - SM_b20130 0.21 +0.6 142,821 + SM_b20130 0.22 -1.1 142,821 + SM_b20130 0.22 -0.0 142,821 + SM_b20130 0.22 +0.4 142,942 + SM_b20130 0.36 -0.5 142,943 - SM_b20130 0.36 -0.4 143,046 + SM_b20130 0.48 -0.8 143,140 + SM_b20130 0.58 +0.4 143,578 - SM_b20131 0.17 -1.4
Or see this region's nucleotide sequence