Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20089 and SM_b20090 are separated by 3 nucleotides SM_b20090 and SM_b20091 are separated by 115 nucleotides SM_b20091 and SM_b20092 are separated by 85 nucleotides SM_b20092 and SM_b20093 are separated by 37 nucleotides SM_b20093 and SM_b20094 overlap by 106 nucleotides
SM_b20089: SM_b20089 - hypothetical protein, at 98,552 to 98,875
_b20089
SM_b20090: SM_b20090 - hypothetical protein, at 98,879 to 99,070
_b20090
SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692
_b20091
SM_b20092: SM_b20092 - hypothetical protein, at 99,778 to 100,536
_b20092
SM_b20093: SM_b20093 - hypothetical protein, at 100,574 to 101,515
_b20093
SM_b20094: SM_b20094 - phospholipase, at 101,410 to 103,182
_b20094
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.800 kb on - strand, within SM_b20089 at 98.800 kb on - strand, within SM_b20089 at 98.853 kb on + strand at 98.854 kb on - strand at 98.854 kb on - strand at 98.855 kb on + strand at 98.856 kb on - strand at 98.880 kb on + strand at 99.180 kb on + strand at 99.192 kb on - strand at 99.404 kb on + strand, within SM_b20091 at 99.405 kb on - strand, within SM_b20091 at 99.489 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.503 kb on + strand, within SM_b20091 at 99.504 kb on - strand, within SM_b20091 at 99.507 kb on + strand, within SM_b20091 at 99.779 kb on + strand at 99.780 kb on - strand at 99.780 kb on - strand at 99.780 kb on - strand at 99.880 kb on + strand, within SM_b20092 at 99.880 kb on + strand, within SM_b20092 at 99.881 kb on - strand, within SM_b20092 at 99.881 kb on - strand, within SM_b20092 at 100.001 kb on + strand, within SM_b20092 at 100.002 kb on - strand, within SM_b20092 at 100.274 kb on + strand, within SM_b20092 at 100.325 kb on - strand, within SM_b20092 at 100.342 kb on - strand, within SM_b20092 at 100.354 kb on + strand at 100.354 kb on + strand, within SM_b20092 at 100.487 kb on + strand at 100.641 kb on - strand at 100.661 kb on - strand at 100.742 kb on + strand, within SM_b20093 at 100.742 kb on + strand, within SM_b20093 at 100.743 kb on - strand, within SM_b20093 at 101.094 kb on - strand, within SM_b20093 at 101.282 kb on + strand, within SM_b20093 at 101.282 kb on + strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 98,800 - SM_b20089 0.77 -0.9 98,800 - SM_b20089 0.77 +0.8 98,853 + -0.6 98,854 - +0.2 98,854 - -2.6 98,855 + -0.1 98,856 - +0.4 98,880 + -0.5 99,180 + -0.2 99,192 - +0.0 99,404 + SM_b20091 0.43 +0.3 99,405 - SM_b20091 0.43 +0.1 99,489 + SM_b20091 0.60 +0.9 99,491 + SM_b20091 0.60 -1.7 99,491 + SM_b20091 0.60 +0.2 99,491 + SM_b20091 0.60 +3.3 99,492 - SM_b20091 0.60 +0.9 99,492 - SM_b20091 0.60 -0.4 99,503 + SM_b20091 0.63 -0.2 99,504 - SM_b20091 0.63 +1.1 99,507 + SM_b20091 0.63 +1.2 99,779 + +0.5 99,780 - +1.6 99,780 - -0.2 99,780 - -0.4 99,880 + SM_b20092 0.13 +1.4 99,880 + SM_b20092 0.13 +0.7 99,881 - SM_b20092 0.14 +0.6 99,881 - SM_b20092 0.14 +0.3 100,001 + SM_b20092 0.29 +1.5 100,002 - SM_b20092 0.30 -1.3 100,274 + SM_b20092 0.65 -0.8 100,325 - SM_b20092 0.72 -1.6 100,342 - SM_b20092 0.74 +0.9 100,354 + +0.7 100,354 + SM_b20092 0.76 +1.2 100,487 + +1.2 100,641 - -1.3 100,661 - -0.6 100,742 + SM_b20093 0.18 -0.6 100,742 + SM_b20093 0.18 +1.1 100,743 - SM_b20093 0.18 +0.2 101,094 - SM_b20093 0.55 -0.3 101,282 + SM_b20093 0.75 -0.0 101,282 + SM_b20093 0.75 -0.0 101,283 - SM_b20093 0.75 +0.6 101,283 - SM_b20093 0.75 -0.9 101,283 - SM_b20093 0.75 -0.0 101,411 + +0.2
Or see this region's nucleotide sequence