Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2855

Experiment: Post-colonization (Day 12) - Cage1;Mouse3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 12) - Cage1;Mouse3
3,562,617	+		BT2854	0.57	-1.0
3,562,622	+		BT2854	0.57	-2.7
3,562,695	+		BT2854	0.60	-0.7
3,562,746	-		BT2854	0.62	+1.0
3,562,776	+		BT2854	0.64	-1.3
3,562,776	+		BT2854	0.64	-1.4
3,562,777	-		BT2854	0.64	+2.4
3,562,787	+		BT2854	0.64	-1.3
3,562,820	+		BT2854	0.66	-1.1
3,562,827	+		BT2854	0.66	-0.3
3,562,829	+		BT2854	0.66	-1.2
3,562,883	+		BT2854	0.68	-1.4
3,562,889	+		BT2854	0.69	-1.5
3,562,981	-		BT2854	0.73	-0.8
3,563,135	-		BT2854	0.79	+0.2
3,563,193	+		BT2854	0.82	-0.3
3,563,226	+		BT2854	0.83	-0.4
3,563,226	+		BT2854	0.83	+0.5
3,563,227	-		BT2854	0.83	+0.1
3,563,232	+		BT2854	0.84	-2.2
3,563,306	+		BT2854	0.87	-1.8
3,563,307	-		BT2854	0.87	+0.6
3,563,307	-		BT2854	0.87	-0.4
3,563,325	-		BT2854	0.88	-1.4
3,563,325	-		BT2854	0.88	-1.1
3,563,375	+		BT2854	0.90	-1.3
3,563,393	-				+0.4
3,563,394	+				+0.0
3,563,394	+				-1.2
3,563,508	+				-1.2
3,563,509	-				+0.7
3,563,514	+				-1.6
3,563,516	+				-1.6
3,563,516	+				-1.2
3,563,575	+				-0.8
3,563,605	-				-0.8
3,563,612	+				-1.7
3,563,613	-				+0.3
3,563,617	-				+3.6
3,563,619	+				-0.4
3,563,621	+				-0.4
3,563,622	-				+4.7
3,563,629	-				+4.4
3,563,682	+				-1.6
3,563,683	-				+4.2
3,563,718	-				+4.2
3,563,776	+				-0.7
3,563,782	+				-1.0
3,563,812	-				+4.6
3,563,940	-		BT2855	0.11	+4.5
3,563,998	+		BT2855	0.13	-0.4
3,563,999	-		BT2855	0.13	+2.6
3,564,093	+		BT2855	0.16	+0.5
3,564,093	+		BT2855	0.16	-0.7
3,564,097	+		BT2855	0.16	+0.9
3,564,097	+		BT2855	0.16	+0.2
3,564,097	+		BT2855	0.16	+1.2
3,564,101	+		BT2855	0.16	-1.1
3,564,164	+		BT2855	0.19	-1.0
3,564,262	+		BT2855	0.22	-1.5
3,564,281	+		BT2855	0.23	-2.0
3,564,281	+		BT2855	0.23	-1.0
3,564,282	-		BT2855	0.23	+3.8
3,564,283	+		BT2855	0.23	+0.2
3,564,283	+		BT2855	0.23	-0.8
3,564,283	+		BT2855	0.23	-1.0
3,564,284	-		BT2855	0.23	+3.1
3,564,284	-		BT2855	0.23	+2.7
3,564,429	+		BT2855	0.28	-0.7
3,564,429	+		BT2855	0.28	-0.5
3,564,481	-		BT2855	0.29	+2.2
3,564,507	+		BT2855	0.30	-2.4
3,564,507	+		BT2855	0.30	+0.2
3,564,513	-		BT2855	0.30	+1.6
3,564,513	-		BT2855	0.30	+4.1
3,564,600	+		BT2855	0.33	-1.7
3,564,601	-		BT2855	0.33	+2.5
3,564,601	-		BT2855	0.33	+2.7
3,564,645	+		BT2855	0.35	-1.7
3,564,653	+		BT2855	0.35	+0.2
3,564,656	+		BT2855	0.35	+1.0
3,564,657	-		BT2855	0.35	+1.7
3,564,676	+		BT2855	0.36	+1.0
3,564,681	+		BT2855	0.36	+0.8
3,564,738	+		BT2855	0.38	-0.7
3,564,759	-		BT2855	0.39	+0.2
3,564,762	+		BT2855	0.39	-0.7
3,564,786	+		BT2855	0.40	-0.2
3,564,798	+		BT2855	0.40	-0.2
3,564,807	-		BT2855	0.40	+1.3
3,564,857	+		BT2855	0.42	-2.4
3,564,857	+		BT2855	0.42	+1.0
3,564,877	-		BT2855	0.43	+0.2
3,564,896	+		BT2855	0.43	-0.8
3,564,915	+				+0.2
3,564,945	+		BT2855	0.45	-0.5
3,564,984	+		BT2855	0.46	+0.2
3,565,090	-		BT2855	0.50	-0.8
3,565,155	+		BT2855	0.52	-0.4
3,565,216	+		BT2855	0.54	+0.2
3,565,259	-		BT2855	0.55	-1.2
3,565,263	+		BT2855	0.56	-1.0
3,565,311	+		BT2855	0.57	-0.7
3,565,347	+		BT2855	0.58	-1.1
3,565,377	+		BT2855	0.59	-1.1
3,565,395	+		BT2855	0.60	-1.4
3,565,395	+		BT2855	0.60	-0.3
3,565,445	+		BT2855	0.62	+0.2
3,565,445	+		BT2855	0.62	-0.4
3,565,446	-		BT2855	0.62	+0.2
3,565,470	+		BT2855	0.63	-0.9
3,565,473	-		BT2855	0.63	+1.6
3,565,492	-		BT2855	0.63	+0.9
3,565,508	-		BT2855	0.64	-0.6
3,565,561	-		BT2855	0.66	-2.0
3,565,594	+		BT2855	0.67	+0.6
3,565,613	-		BT2855	0.67	-0.3
3,565,619	-		BT2855	0.68	+0.9
3,565,655	+		BT2855	0.69	-1.1
3,565,707	-		BT2855	0.71	+0.8
3,565,750	-		BT2855	0.72	-2.3
3,565,809	+		BT2855	0.74	-2.1
3,565,809	+		BT2855	0.74	-2.6
3,565,810	-				+1.2
3,565,810	-		BT2855	0.74	-0.8
3,565,890	+		BT2855	0.77	-1.8
3,565,937	+		BT2855	0.78	-1.2
3,565,976	+		BT2855	0.80	-0.2
3,565,977	-		BT2855	0.80	+0.7
3,565,977	-		BT2855	0.80	+0.7
3,566,009	+		BT2855	0.81	-0.8
3,566,009	+		BT2855	0.81	-0.4
3,566,060	-		BT2855	0.82	-0.3
3,566,068	+		BT2855	0.83	-1.5
3,566,104	-		BT2855	0.84	-1.2
3,566,235	+		BT2855	0.88	-1.3
3,566,281	+		BT2855	0.90	-1.0
3,566,281	+		BT2855	0.90	-2.1
3,566,472	+				-2.1
3,566,593	+				-1.1
3,566,616	+				-0.1
3,566,638	+				+0.2
3,566,638	+				-0.1
3,566,638	+				-1.5
3,566,638	+				+0.2
3,566,640	+				-1.3
3,566,661	-				+7.9
3,566,680	+				+0.1
3,566,681	-				+6.6
3,566,683	-				+9.1
3,566,683	-				+7.4
3,566,684	+				-1.1
3,566,684	+				-1.4
3,566,684	+				+0.4
3,566,706	+				-0.9
3,566,707	-				+8.8
3,566,726	+				+0.7
3,566,726	+				-1.3
3,566,726	+				-1.4
3,566,728	+				-1.4
3,566,728	+				-0.8
3,566,728	+				+1.2
3,566,728	+				-0.8
3,566,736	-				+7.2
3,566,788	+				-0.8
3,566,805	+				-0.2
3,566,826	+				-1.5
3,566,895	+		BT2856	0.10	-1.0
3,566,931	+		BT2856	0.13	-0.1
3,566,974	+		BT2856	0.17	-1.1
3,566,974	+		BT2856	0.17	-2.0
3,566,975	-		BT2856	0.17	+6.5
3,567,077	+		BT2856	0.25	-1.0
3,567,109	+		BT2856	0.28	-0.7
3,567,191	+		BT2856	0.35	+0.2
3,567,228	+		BT2856	0.38	-1.4
3,567,229	-		BT2856	0.38	+7.3
3,567,337	-		BT2856	0.47	+6.2
3,567,471	-		BT2856	0.58	+5.7
3,567,475	+		BT2856	0.58	+1.2
3,567,476	-		BT2856	0.58	+5.7
3,567,483	+		BT2856	0.59	-0.5