Strain Fitness in Sinorhizobium meliloti 1021 around SMc02236

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02234 and SMc02235 are separated by 98 nucleotidesSMc02235 and SMc02236 are separated by 119 nucleotidesSMc02236 and SMc02237 are separated by 243 nucleotides SMc02234: SMc02234 - hypothetical protein, at 598,621 to 599,424 SMc02234 SMc02235: SMc02235 - transcriptional regulator, at 599,523 to 599,759 SMc02235 SMc02236: SMc02236 - DNA repair nuclease, ligase-associated (TIGR04123) (from data), at 599,879 to 600,607 SMc02236 SMc02237: SMc02237 - DNA damage response helicase, ligase-associated (from data), at 600,851 to 603,400 SMc02237 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 598.927 kb on - strand, within SMc02234at 599.138 kb on - strand, within SMc02234at 599.243 kb on - strand, within SMc02234at 599.323 kb on - strand, within SMc02234at 599.354 kb on - strandat 599.568 kb on + strand, within SMc02235at 599.568 kb on + strand, within SMc02235at 599.568 kb on + strand, within SMc02235at 599.569 kb on - strand, within SMc02235at 599.569 kb on - strand, within SMc02235at 599.569 kb on - strand, within SMc02235at 599.616 kb on + strand, within SMc02235at 599.617 kb on - strand, within SMc02235at 599.617 kb on - strand, within SMc02235at 599.634 kb on + strand, within SMc02235at 599.634 kb on + strand, within SMc02235at 599.635 kb on - strand, within SMc02235at 599.656 kb on - strand, within SMc02235at 599.656 kb on - strand, within SMc02235at 599.757 kb on + strandat 599.758 kb on - strandat 599.825 kb on + strandat 599.825 kb on + strandat 599.826 kb on - strandat 599.850 kb on + strandat 599.910 kb on + strandat 599.911 kb on - strandat 599.911 kb on - strandat 600.400 kb on + strand, within SMc02236at 600.400 kb on + strand, within SMc02236at 600.400 kb on + strand, within SMc02236at 600.401 kb on - strand, within SMc02236at 600.405 kb on + strand, within SMc02236at 600.405 kb on + strand, within SMc02236at 600.405 kb on + strand, within SMc02236at 600.495 kb on + strand, within SMc02236at 600.495 kb on + strand, within SMc02236at 600.496 kb on - strand, within SMc02236at 600.496 kb on - strand, within SMc02236at 600.496 kb on - strand, within SMc02236at 600.586 kb on - strandat 600.667 kb on - strandat 600.709 kb on + strandat 600.843 kb on + strandat 600.843 kb on + strandat 600.843 kb on + strandat 600.843 kb on + strandat 600.844 kb on - strandat 600.844 kb on - strandat 600.863 kb on - strandat 601.012 kb on + strandat 601.127 kb on + strand, within SMc02237at 601.128 kb on - strand, within SMc02237at 601.128 kb on - strand, within SMc02237at 601.135 kb on - strand, within SMc02237at 601.158 kb on - strand, within SMc02237at 601.203 kb on - strand, within SMc02237at 601.235 kb on - strand, within SMc02237at 601.235 kb on - strand, within SMc02237at 601.235 kb on - strand, within SMc02237at 601.289 kb on - strand, within SMc02237at 601.476 kb on + strand, within SMc02237at 601.477 kb on - strand, within SMc02237at 601.477 kb on - strand, within SMc02237at 601.477 kb on - strand, within SMc02237at 601.477 kb on - strand, within SMc02237at 601.477 kb on - strand, within SMc02237at 601.488 kb on + strand, within SMc02237at 601.488 kb on + strand, within SMc02237at 601.489 kb on - strand, within SMc02237at 601.489 kb on - strand, within SMc02237at 601.489 kb on - strand, within SMc02237at 601.489 kb on - strand, within SMc02237

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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598,927 - SMc02234 0.38 +0.0
599,138 - SMc02234 0.64 -1.3
599,243 - SMc02234 0.77 -0.5
599,323 - SMc02234 0.87 +0.5
599,354 - -0.1
599,568 + SMc02235 0.19 -2.3
599,568 + SMc02235 0.19 +0.9
599,568 + SMc02235 0.19 +0.3
599,569 - SMc02235 0.19 -0.2
599,569 - SMc02235 0.19 -2.0
599,569 - SMc02235 0.19 +0.2
599,616 + SMc02235 0.39 +0.6
599,617 - SMc02235 0.40 -0.3
599,617 - SMc02235 0.40 +0.6
599,634 + SMc02235 0.47 +0.0
599,634 + SMc02235 0.47 -1.8
599,635 - SMc02235 0.47 +0.2
599,656 - SMc02235 0.56 +0.2
599,656 - SMc02235 0.56 +1.7
599,757 + +0.6
599,758 - +0.1
599,825 + +0.6
599,825 + -0.1
599,826 - +0.2
599,850 + +0.3
599,910 + -0.2
599,911 - +0.1
599,911 - +0.1
600,400 + SMc02236 0.71 +0.2
600,400 + SMc02236 0.71 +0.7
600,400 + SMc02236 0.71 +1.1
600,401 - SMc02236 0.72 +0.4
600,405 + SMc02236 0.72 +2.7
600,405 + SMc02236 0.72 -0.3
600,405 + SMc02236 0.72 -0.4
600,495 + SMc02236 0.84 -0.3
600,495 + SMc02236 0.84 +0.0
600,496 - SMc02236 0.85 -1.1
600,496 - SMc02236 0.85 +0.3
600,496 - SMc02236 0.85 -1.8
600,586 - -0.3
600,667 - +0.8
600,709 + +0.6
600,843 + +1.3
600,843 + +1.2
600,843 + +0.2
600,843 + +3.3
600,844 - +1.2
600,844 - -1.1
600,863 - +0.8
601,012 + -0.4
601,127 + SMc02237 0.11 +0.6
601,128 - SMc02237 0.11 +0.3
601,128 - SMc02237 0.11 +0.3
601,135 - SMc02237 0.11 -0.5
601,158 - SMc02237 0.12 +0.2
601,203 - SMc02237 0.14 -0.9
601,235 - SMc02237 0.15 +0.3
601,235 - SMc02237 0.15 +0.1
601,235 - SMc02237 0.15 +0.7
601,289 - SMc02237 0.17 -0.3
601,476 + SMc02237 0.25 +0.6
601,477 - SMc02237 0.25 +0.1
601,477 - SMc02237 0.25 -1.2
601,477 - SMc02237 0.25 -0.1
601,477 - SMc02237 0.25 +0.7
601,477 - SMc02237 0.25 -1.0
601,488 + SMc02237 0.25 +0.0
601,488 + SMc02237 0.25 -0.1
601,489 - SMc02237 0.25 -2.0
601,489 - SMc02237 0.25 +0.5
601,489 - SMc02237 0.25 -1.0
601,489 - SMc02237 0.25 -2.0

Or see this region's nucleotide sequence