Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02189 and SMc02200 are separated by 1 nucleotides SMc02200 and SMc02184 are separated by 136 nucleotides
SMc02189: SMc02189 - hypothetical protein, at 545,715 to 545,969
SMc02189
SMc02200: SMc02200 - hypothetical protein, at 545,971 to 546,495
SMc02200
SMc02184: SMc02184 - transcriptional regulator, at 546,632 to 546,901
SMc02184
Position (kb) 545
546 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 544.741 kb on + strand at 544.826 kb on + strand at 544.826 kb on + strand at 544.827 kb on - strand at 544.827 kb on - strand at 544.893 kb on + strand at 544.893 kb on + strand at 544.894 kb on - strand at 544.894 kb on - strand at 544.894 kb on - strand at 544.925 kb on + strand at 544.926 kb on - strand at 544.926 kb on - strand at 544.991 kb on - strand at 544.993 kb on + strand at 544.993 kb on + strand at 544.994 kb on - strand at 544.994 kb on - strand at 545.118 kb on - strand at 545.273 kb on - strand at 545.273 kb on - strand at 545.284 kb on + strand at 545.285 kb on - strand at 545.288 kb on + strand at 545.289 kb on - strand at 545.289 kb on - strand at 545.361 kb on + strand at 545.397 kb on + strand at 545.397 kb on + strand at 545.397 kb on + strand at 545.398 kb on - strand at 545.430 kb on - strand at 545.434 kb on + strand at 545.438 kb on + strand at 545.439 kb on - strand at 545.443 kb on + strand at 545.443 kb on + strand at 545.443 kb on + strand at 545.755 kb on + strand, within SMc02189 at 545.796 kb on - strand, within SMc02189 at 545.915 kb on + strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.919 kb on + strand, within SMc02189 at 545.920 kb on - strand, within SMc02189 at 545.933 kb on + strand, within SMc02189 at 545.934 kb on - strand, within SMc02189 at 545.934 kb on - strand, within SMc02189 at 545.951 kb on - strand at 546.070 kb on + strand, within SMc02200 at 546.070 kb on + strand, within SMc02200 at 546.095 kb on - strand, within SMc02200 at 546.095 kb on - strand, within SMc02200 at 546.135 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.175 kb on - strand, within SMc02200 at 546.201 kb on + strand, within SMc02200 at 546.326 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.400 kb on + strand, within SMc02200 at 546.469 kb on + strand at 546.469 kb on + strand at 546.556 kb on + strand at 546.557 kb on - strand at 546.557 kb on - strand at 546.562 kb on - strand at 546.615 kb on + strand at 546.616 kb on - strand at 546.690 kb on + strand, within SMc02184 at 546.691 kb on - strand, within SMc02184 at 546.735 kb on - strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 544,741 + -0.3 544,826 + +0.2 544,826 + -1.8 544,827 - -1.0 544,827 - +0.1 544,893 + -0.7 544,893 + +0.3 544,894 - -0.7 544,894 - +0.3 544,894 - +0.8 544,925 + -0.7 544,926 - -0.8 544,926 - +0.1 544,991 - -0.4 544,993 + -0.7 544,993 + -0.9 544,994 - -2.1 544,994 - -0.7 545,118 - -0.9 545,273 - +0.0 545,273 - -1.7 545,284 + +0.4 545,285 - -0.5 545,288 + +1.6 545,289 - -0.2 545,289 - +0.4 545,361 + +0.9 545,397 + +0.6 545,397 + -0.3 545,397 + -0.2 545,398 - -1.9 545,430 - -1.1 545,434 + -0.3 545,438 + +0.2 545,439 - -1.5 545,443 + +0.2 545,443 + +0.5 545,443 + -0.2 545,755 + SMc02189 0.16 -1.1 545,796 - SMc02189 0.32 -0.5 545,915 + SMc02189 0.78 -0.1 545,916 - SMc02189 0.79 -0.3 545,916 - SMc02189 0.79 -0.6 545,916 - SMc02189 0.79 -2.3 545,916 - SMc02189 0.79 -1.0 545,916 - SMc02189 0.79 +0.3 545,919 + SMc02189 0.80 -0.3 545,920 - SMc02189 0.80 +0.9 545,933 + SMc02189 0.85 -0.9 545,934 - SMc02189 0.86 -0.1 545,934 - SMc02189 0.86 -0.2 545,951 - -0.3 546,070 + SMc02200 0.19 -0.8 546,070 + SMc02200 0.19 -0.8 546,095 - SMc02200 0.24 -0.3 546,095 - SMc02200 0.24 +0.3 546,135 - SMc02200 0.31 -0.7 546,171 - SMc02200 0.38 -0.1 546,171 - SMc02200 0.38 -0.1 546,171 - SMc02200 0.38 -2.0 546,171 - SMc02200 0.38 +1.6 546,175 - SMc02200 0.39 +0.3 546,201 + SMc02200 0.44 -0.1 546,326 + SMc02200 0.68 +1.1 546,333 + SMc02200 0.69 -2.2 546,333 + SMc02200 0.69 +0.4 546,398 - SMc02200 0.81 -0.1 546,398 - SMc02200 0.81 +0.1 546,400 + SMc02200 0.82 -1.6 546,469 + -0.2 546,469 + +0.1 546,556 + -1.3 546,557 - +0.1 546,557 - +1.1 546,562 - +0.7 546,615 + +1.5 546,616 - +1.0 546,690 + SMc02184 0.21 +2.1 546,691 - SMc02184 0.22 -0.1 546,735 - SMc02184 0.38 +0.8 546,783 + SMc02184 0.56 -0.2 546,783 + SMc02184 0.56 +2.9 546,784 - SMc02184 0.56 -0.1 546,784 - SMc02184 0.56 -0.6 546,784 - SMc02184 0.56 +0.1 546,895 + -1.1 546,895 + -0.3 546,895 + -0.6 546,895 + -0.2 546,895 + -1.8 546,896 - +0.7 546,896 - +0.2 546,896 - +0.6 546,899 + -0.5
Or see this region's nucleotide sequence