Strain Fitness in Sinorhizobium meliloti 1021 around SMc01851

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01852 and SMc01851 are separated by 137 nucleotidesSMc01851 and SMc01850 are separated by 132 nucleotides SMc01852: SMc01852 - pyrophosphate--fructose-6-phosphate 1-phosphotransferase, at 2,361,151 to 2,362,365 SMc01852 SMc01851: SMc01851 - amino acid efflux protein, at 2,362,503 to 2,363,138 SMc01851 SMc01850: SMc01850 - hypothetical protein, at 2,363,271 to 2,364,272 SMc01850 Position (kb) 2362 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2at 2361.551 kb on - strand, within SMc01852at 2361.778 kb on + strand, within SMc01852at 2361.779 kb on - strand, within SMc01852at 2361.780 kb on + strand, within SMc01852at 2361.780 kb on + strand, within SMc01852at 2361.805 kb on + strand, within SMc01852at 2361.806 kb on - strand, within SMc01852at 2361.856 kb on + strand, within SMc01852at 2361.856 kb on + strand, within SMc01852at 2361.857 kb on - strand, within SMc01852at 2361.857 kb on - strand, within SMc01852at 2361.857 kb on - strand, within SMc01852at 2362.123 kb on + strand, within SMc01852at 2362.123 kb on + strand, within SMc01852at 2362.123 kb on + strand, within SMc01852at 2362.123 kb on + strand, within SMc01852at 2362.124 kb on - strand, within SMc01852at 2362.124 kb on - strand, within SMc01852at 2362.124 kb on - strand, within SMc01852at 2362.124 kb on - strand, within SMc01852at 2362.124 kb on - strand, within SMc01852at 2362.124 kb on - strand, within SMc01852at 2362.590 kb on + strand, within SMc01851at 2362.747 kb on - strand, within SMc01851at 2362.857 kb on + strand, within SMc01851at 2362.857 kb on + strand, within SMc01851at 2362.858 kb on - strand, within SMc01851at 2362.858 kb on - strand, within SMc01851at 2362.858 kb on - strand, within SMc01851at 2362.858 kb on - strand, within SMc01851at 2362.875 kb on - strand, within SMc01851at 2363.004 kb on + strand, within SMc01851at 2363.004 kb on + strand, within SMc01851at 2363.005 kb on - strand, within SMc01851at 2363.051 kb on + strand, within SMc01851at 2363.052 kb on - strand, within SMc01851at 2363.367 kb on - strandat 2363.440 kb on - strand, within SMc01850at 2363.672 kb on + strand, within SMc01850at 2363.952 kb on + strand, within SMc01850at 2363.953 kb on - strand, within SMc01850at 2364.066 kb on + strand, within SMc01850at 2364.091 kb on - strand, within SMc01850at 2364.091 kb on - strand, within SMc01850

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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2,361,551 - SMc01852 0.33 -0.9
2,361,778 + SMc01852 0.52 -1.0
2,361,779 - SMc01852 0.52 +0.5
2,361,780 + SMc01852 0.52 -1.0
2,361,780 + SMc01852 0.52 -0.7
2,361,805 + SMc01852 0.54 -0.6
2,361,806 - SMc01852 0.54 -1.3
2,361,856 + SMc01852 0.58 -2.5
2,361,856 + SMc01852 0.58 -2.4
2,361,857 - SMc01852 0.58 +0.1
2,361,857 - SMc01852 0.58 -0.3
2,361,857 - SMc01852 0.58 +0.8
2,362,123 + SMc01852 0.80 -0.4
2,362,123 + SMc01852 0.80 -0.0
2,362,123 + SMc01852 0.80 -0.6
2,362,123 + SMc01852 0.80 -0.2
2,362,124 - SMc01852 0.80 -1.2
2,362,124 - SMc01852 0.80 -0.8
2,362,124 - SMc01852 0.80 -1.2
2,362,124 - SMc01852 0.80 -1.1
2,362,124 - SMc01852 0.80 -1.3
2,362,124 - SMc01852 0.80 -1.5
2,362,590 + SMc01851 0.14 +0.2
2,362,747 - SMc01851 0.38 +0.3
2,362,857 + SMc01851 0.56 -0.7
2,362,857 + SMc01851 0.56 -0.5
2,362,858 - SMc01851 0.56 -0.7
2,362,858 - SMc01851 0.56 +0.5
2,362,858 - SMc01851 0.56 +0.5
2,362,858 - SMc01851 0.56 -0.3
2,362,875 - SMc01851 0.58 -0.4
2,363,004 + SMc01851 0.79 -0.1
2,363,004 + SMc01851 0.79 -0.1
2,363,005 - SMc01851 0.79 +0.1
2,363,051 + SMc01851 0.86 +0.5
2,363,052 - SMc01851 0.86 -0.3
2,363,367 - -0.9
2,363,440 - SMc01850 0.17 -0.3
2,363,672 + SMc01850 0.40 +2.3
2,363,952 + SMc01850 0.68 -2.1
2,363,953 - SMc01850 0.68 +1.3
2,364,066 + SMc01850 0.79 -0.2
2,364,091 - SMc01850 0.82 -1.1
2,364,091 - SMc01850 0.82 +0.4

Or see this region's nucleotide sequence