Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00804 and SMc00805 are separated by 33 nucleotides SMc00805 and SMc00806 are separated by 273 nucleotides SMc00806 and SMc00807 are separated by 267 nucleotides
SMc00804: SMc00804 - hypothetical protein, at 823,007 to 824,230
SMc00804
SMc00805: SMc00805 - hypothetical protein, at 824,264 to 824,908
SMc00805
SMc00806: SMc00806 - hypothetical protein, at 825,182 to 825,550
SMc00806
SMc00807: SMc00807 - transport transmembrane protein, at 825,818 to 827,020
SMc00807
Position (kb) 825
826 Strain fitness (log2 ratio) -2
-1
0
1
2 at 824.228 kb on + strand at 824.228 kb on + strand at 824.229 kb on - strand at 824.229 kb on - strand at 824.229 kb on - strand at 824.243 kb on + strand at 824.244 kb on - strand at 824.244 kb on - strand at 824.244 kb on - strand at 824.488 kb on + strand, within SMc00805 at 824.802 kb on + strand, within SMc00805 at 824.803 kb on - strand, within SMc00805 at 824.843 kb on + strand, within SMc00805 at 824.844 kb on - strand at 824.906 kb on + strand at 824.906 kb on + strand at 824.920 kb on + strand at 824.920 kb on + strand at 824.921 kb on - strand at 824.921 kb on - strand at 824.921 kb on - strand at 824.922 kb on + strand at 824.922 kb on + strand at 824.923 kb on - strand at 824.953 kb on - strand at 825.036 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.069 kb on - strand at 825.077 kb on + strand at 825.166 kb on - strand at 825.166 kb on - strand at 825.175 kb on - strand at 825.175 kb on - strand at 825.175 kb on - strand at 825.192 kb on + strand at 825.359 kb on + strand, within SMc00806 at 825.360 kb on - strand, within SMc00806 at 825.360 kb on - strand, within SMc00806 at 825.412 kb on - strand, within SMc00806 at 825.474 kb on - strand, within SMc00806 at 825.549 kb on - strand at 825.565 kb on - strand at 825.740 kb on - strand at 825.740 kb on - strand at 825.873 kb on + strand at 825.874 kb on - strand at 825.900 kb on - strand at 826.038 kb on + strand, within SMc00807 at 826.038 kb on + strand, within SMc00807 at 826.038 kb on + strand, within SMc00807 at 826.039 kb on - strand, within SMc00807 at 826.039 kb on - strand, within SMc00807 at 826.082 kb on + strand, within SMc00807 at 826.082 kb on + strand, within SMc00807 at 826.114 kb on + strand, within SMc00807 at 826.114 kb on + strand, within SMc00807 at 826.114 kb on + strand, within SMc00807 at 826.115 kb on - strand, within SMc00807 at 826.115 kb on - strand, within SMc00807 at 826.373 kb on + strand, within SMc00807 at 826.373 kb on + strand, within SMc00807 at 826.373 kb on + strand, within SMc00807 at 826.373 kb on + strand, within SMc00807 at 826.374 kb on - strand, within SMc00807 at 826.374 kb on - strand, within SMc00807 at 826.447 kb on - strand, within SMc00807 at 826.451 kb on + strand, within SMc00807 at 826.451 kb on + strand, within SMc00807 at 826.451 kb on + strand, within SMc00807
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 824,228 + -0.7 824,228 + -0.5 824,229 - -0.6 824,229 - -0.7 824,229 - +0.1 824,243 + +0.3 824,244 - -0.9 824,244 - +0.0 824,244 - -0.1 824,488 + SMc00805 0.35 +1.6 824,802 + SMc00805 0.83 +0.7 824,803 - SMc00805 0.84 +0.3 824,843 + SMc00805 0.90 -0.2 824,844 - +0.1 824,906 + -0.0 824,906 + +1.8 824,920 + +0.3 824,920 + -1.7 824,921 - +2.4 824,921 - -0.7 824,921 - -0.4 824,922 + -0.2 824,922 + +0.1 824,923 - +0.2 824,953 - -0.7 825,036 + -1.9 825,068 + +0.4 825,068 + +0.2 825,069 - -0.4 825,077 + +0.3 825,166 - +2.0 825,166 - +0.6 825,175 - -0.2 825,175 - +0.3 825,175 - -0.8 825,192 + -0.2 825,359 + SMc00806 0.48 +0.7 825,360 - SMc00806 0.48 +1.7 825,360 - SMc00806 0.48 -0.4 825,412 - SMc00806 0.62 +0.3 825,474 - SMc00806 0.79 +1.1 825,549 - +0.0 825,565 - +0.0 825,740 - +1.2 825,740 - -0.0 825,873 + +0.4 825,874 - -0.5 825,900 - -1.3 826,038 + SMc00807 0.18 -0.0 826,038 + SMc00807 0.18 -0.6 826,038 + SMc00807 0.18 -0.4 826,039 - SMc00807 0.18 -0.2 826,039 - SMc00807 0.18 +0.8 826,082 + SMc00807 0.22 -0.2 826,082 + SMc00807 0.22 +0.3 826,114 + SMc00807 0.25 +0.2 826,114 + SMc00807 0.25 +1.8 826,114 + SMc00807 0.25 +0.1 826,115 - SMc00807 0.25 +0.1 826,115 - SMc00807 0.25 -0.7 826,373 + SMc00807 0.46 +0.6 826,373 + SMc00807 0.46 -0.1 826,373 + SMc00807 0.46 +0.1 826,373 + SMc00807 0.46 +0.3 826,374 - SMc00807 0.46 -2.0 826,374 - SMc00807 0.46 -0.3 826,447 - SMc00807 0.52 -0.6 826,451 + SMc00807 0.53 -0.7 826,451 + SMc00807 0.53 +1.1 826,451 + SMc00807 0.53 +0.1
Or see this region's nucleotide sequence