Strain Fitness in Sinorhizobium meliloti 1021 around SMa1846

Experiment: R2A control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1844 and SMa1846 are separated by 9 nucleotidesSMa1846 and SMa1848 are separated by 34 nucleotides SMa1844: SMa1844 - aldehyde, at 1,045,137 to 1,046,600 SMa1844 SMa1846: SMa1846 - 3-isopropylmalate dehydrogenase, at 1,046,610 to 1,047,653 SMa1846 SMa1848: SMa1848 - GabD5 succinate semialdehyde dehdyrogenase, at 1,047,688 to 1,049,142 SMa1848 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -1 0 1 2at 1045.716 kb on + strand, within SMa1844at 1045.717 kb on - strand, within SMa1844at 1045.827 kb on - strand, within SMa1844at 1045.827 kb on - strand, within SMa1844at 1046.245 kb on - strand, within SMa1844at 1046.383 kb on - strand, within SMa1844at 1046.476 kb on - strandat 1046.514 kb on + strandat 1046.514 kb on + strandat 1046.514 kb on + strandat 1046.556 kb on + strandat 1046.556 kb on + strandat 1046.726 kb on + strand, within SMa1846at 1046.754 kb on + strand, within SMa1846at 1046.755 kb on - strand, within SMa1846at 1046.755 kb on - strand, within SMa1846at 1046.755 kb on - strand, within SMa1846at 1046.756 kb on + strand, within SMa1846at 1046.911 kb on - strand, within SMa1846at 1046.911 kb on - strand, within SMa1846at 1046.931 kb on - strand, within SMa1846at 1046.931 kb on - strand, within SMa1846at 1047.229 kb on - strand, within SMa1846at 1047.252 kb on + strand, within SMa1846at 1047.252 kb on + strand, within SMa1846at 1047.253 kb on - strand, within SMa1846at 1047.253 kb on - strand, within SMa1846at 1047.253 kb on - strand, within SMa1846at 1047.253 kb on - strand, within SMa1846at 1047.456 kb on - strand, within SMa1846at 1047.682 kb on - strandat 1048.308 kb on + strand, within SMa1848at 1048.591 kb on + strand, within SMa1848at 1048.592 kb on - strand, within SMa1848

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
remove
1,045,716 + SMa1844 0.40 +1.3
1,045,717 - SMa1844 0.40 +0.3
1,045,827 - SMa1844 0.47 +0.4
1,045,827 - SMa1844 0.47 +0.1
1,046,245 - SMa1844 0.76 +1.4
1,046,383 - SMa1844 0.85 +0.4
1,046,476 - -1.4
1,046,514 + -0.7
1,046,514 + +0.8
1,046,514 + -0.2
1,046,556 + +0.0
1,046,556 + +2.1
1,046,726 + SMa1846 0.11 +0.3
1,046,754 + SMa1846 0.14 +0.2
1,046,755 - SMa1846 0.14 +1.4
1,046,755 - SMa1846 0.14 +0.7
1,046,755 - SMa1846 0.14 +0.8
1,046,756 + SMa1846 0.14 +0.5
1,046,911 - SMa1846 0.29 -0.4
1,046,911 - SMa1846 0.29 +1.5
1,046,931 - SMa1846 0.31 +0.5
1,046,931 - SMa1846 0.31 +0.6
1,047,229 - SMa1846 0.59 -0.1
1,047,252 + SMa1846 0.61 -0.7
1,047,252 + SMa1846 0.61 +0.2
1,047,253 - SMa1846 0.62 -0.6
1,047,253 - SMa1846 0.62 +0.6
1,047,253 - SMa1846 0.62 -0.5
1,047,253 - SMa1846 0.62 -1.3
1,047,456 - SMa1846 0.81 -1.1
1,047,682 - -0.5
1,048,308 + SMa1848 0.43 +0.0
1,048,591 + SMa1848 0.62 +0.7
1,048,592 - SMa1848 0.62 +0.5

Or see this region's nucleotide sequence