Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0857 and SMa0861 are separated by 370 nucleotides SMa0861 and SMa0863 are separated by 301 nucleotides
SMa0857: SMa0857 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 473,663 to 475,588
SMa0857
SMa0861: SMa0861 - transposase, fragment, at 475,959 to 476,840
SMa0861
SMa0863: SMa0863 - NodJ ABC transporter permease, at 477,142 to 477,930
SMa0863
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1 at 475.137 kb on - strand, within SMa0857 at 475.444 kb on - strand at 475.483 kb on + strand at 475.485 kb on + strand at 475.485 kb on + strand at 475.486 kb on - strand at 475.486 kb on - strand at 475.586 kb on + strand at 475.587 kb on - strand at 475.600 kb on - strand at 475.655 kb on + strand at 475.655 kb on + strand at 475.655 kb on + strand at 475.657 kb on + strand at 475.672 kb on - strand at 475.725 kb on - strand at 475.794 kb on + strand at 475.795 kb on - strand at 475.815 kb on + strand at 475.815 kb on + strand at 475.816 kb on - strand at 475.816 kb on - strand at 475.896 kb on + strand at 475.896 kb on + strand at 475.897 kb on - strand at 476.179 kb on + strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.485 kb on + strand, within SMa0861 at 476.496 kb on + strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.642 kb on - strand, within SMa0861 at 476.811 kb on + strand at 476.812 kb on - strand at 476.826 kb on - strand at 476.882 kb on + strand at 476.883 kb on - strand at 477.008 kb on - strand at 477.200 kb on + strand at 477.200 kb on + strand at 477.201 kb on - strand at 477.201 kb on - strand at 477.401 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.455 kb on - strand, within SMa0863 at 477.455 kb on - strand, within SMa0863 at 477.486 kb on - strand, within SMa0863 at 477.564 kb on + strand, within SMa0863 at 477.565 kb on - strand, within SMa0863 at 477.565 kb on - strand, within SMa0863 at 477.669 kb on - strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.738 kb on - strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.800 kb on - strand, within SMa0863 at 477.803 kb on - strand, within SMa0863
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 475,137 - SMa0857 0.77 -1.2 475,444 - -0.2 475,483 + -1.6 475,485 + -0.4 475,485 + -0.2 475,486 - +1.1 475,486 - +0.2 475,586 + -0.4 475,587 - +0.0 475,600 - +0.1 475,655 + +0.1 475,655 + -2.4 475,655 + +0.1 475,657 + -1.3 475,672 - -0.1 475,725 - -0.5 475,794 + -1.1 475,795 - -0.4 475,815 + -0.3 475,815 + -0.4 475,816 - -0.7 475,816 - -0.2 475,896 + +0.2 475,896 + +0.4 475,897 - -0.2 476,179 + SMa0861 0.25 -1.1 476,379 - SMa0861 0.48 +0.1 476,379 - SMa0861 0.48 -0.0 476,485 + SMa0861 0.60 -1.5 476,496 + SMa0861 0.61 -0.2 476,497 - SMa0861 0.61 -0.0 476,497 - SMa0861 0.61 -2.2 476,642 - SMa0861 0.77 -0.4 476,811 + -0.2 476,812 - -0.1 476,826 - -1.7 476,882 + +0.0 476,883 - -0.9 477,008 - -1.0 477,200 + -0.3 477,200 + -0.2 477,201 - -0.5 477,201 - -0.2 477,401 + SMa0863 0.33 -0.5 477,439 + SMa0863 0.38 -1.0 477,439 + SMa0863 0.38 -1.6 477,439 + SMa0863 0.38 -0.3 477,455 - SMa0863 0.40 -0.1 477,455 - SMa0863 0.40 -0.7 477,486 - SMa0863 0.44 +1.6 477,564 + SMa0863 0.53 +0.1 477,565 - SMa0863 0.54 -0.9 477,565 - SMa0863 0.54 -0.8 477,669 - SMa0863 0.67 +0.7 477,737 + SMa0863 0.75 +1.1 477,737 + SMa0863 0.75 -1.3 477,737 + SMa0863 0.75 -0.2 477,738 - SMa0863 0.76 -0.6 477,799 + SMa0863 0.83 +0.8 477,799 + SMa0863 0.83 -0.6 477,799 + SMa0863 0.83 -0.3 477,799 + SMa0863 0.83 -0.7 477,800 - SMa0863 0.83 -0.3 477,803 - SMa0863 0.84 -0.8
Or see this region's nucleotide sequence