Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21144 and SM_b21145 are separated by 77 nucleotides SM_b21145 and SM_b21146 overlap by 4 nucleotides SM_b21146 and SM_b21147 overlap by 1 nucleotides
SM_b21144: SM_b21144 - choline uptake ABC transporter substrate-binding protein precursor, at 888,559 to 889,476
_b21144
SM_b21145: SM_b21145 - choline uptake ABC transporter permease, at 889,554 to 890,753
_b21145
SM_b21146: SM_b21146 - choline uptake ABC transporter ATP-binding protein, at 890,750 to 891,688
_b21146
SM_b21147: SM_b21147 - choline uptake ABC transporter permease, at 891,688 to 892,425
_b21147
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1
2 at 888.794 kb on - strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.805 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.895 kb on + strand, within SM_b21144 at 888.896 kb on - strand, within SM_b21144 at 888.940 kb on - strand, within SM_b21144 at 889.213 kb on + strand, within SM_b21144 at 889.285 kb on + strand, within SM_b21144 at 889.286 kb on - strand, within SM_b21144 at 889.474 kb on + strand at 889.474 kb on + strand at 889.475 kb on - strand at 889.475 kb on - strand at 889.506 kb on + strand at 889.738 kb on - strand, within SM_b21145 at 890.080 kb on - strand, within SM_b21145 at 890.376 kb on + strand, within SM_b21145 at 890.376 kb on + strand, within SM_b21145 at 890.377 kb on - strand, within SM_b21145 at 890.377 kb on - strand, within SM_b21145 at 890.681 kb on + strand at 890.770 kb on - strand at 890.780 kb on + strand at 890.780 kb on + strand at 890.830 kb on + strand at 890.929 kb on - strand, within SM_b21146 at 890.929 kb on - strand, within SM_b21146 at 890.984 kb on + strand, within SM_b21146 at 891.143 kb on + strand, within SM_b21146 at 891.216 kb on + strand, within SM_b21146 at 891.217 kb on - strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.399 kb on - strand, within SM_b21146 at 891.399 kb on - strand, within SM_b21146
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 888,794 - SM_b21144 0.26 -1.4 888,802 + SM_b21144 0.26 +0.4 888,802 + SM_b21144 0.26 +1.2 888,802 + SM_b21144 0.26 -0.9 888,804 + SM_b21144 0.27 +2.5 888,804 + SM_b21144 0.27 +0.8 888,805 - SM_b21144 0.27 -0.1 888,872 - SM_b21144 0.34 -0.0 888,872 - SM_b21144 0.34 -1.6 888,872 - SM_b21144 0.34 -0.3 888,895 + SM_b21144 0.37 -0.4 888,896 - SM_b21144 0.37 +2.2 888,940 - SM_b21144 0.42 -0.9 889,213 + SM_b21144 0.71 -0.0 889,285 + SM_b21144 0.79 +0.8 889,286 - SM_b21144 0.79 +0.4 889,474 + -0.7 889,474 + -0.5 889,475 - +2.0 889,475 - -1.6 889,506 + -0.2 889,738 - SM_b21145 0.15 +0.2 890,080 - SM_b21145 0.44 -0.1 890,376 + SM_b21145 0.69 +0.3 890,376 + SM_b21145 0.69 +1.1 890,377 - SM_b21145 0.69 -0.9 890,377 - SM_b21145 0.69 +1.1 890,681 + +0.1 890,770 - -0.5 890,780 + -0.0 890,780 + +0.0 890,830 + +0.1 890,929 - SM_b21146 0.19 +0.4 890,929 - SM_b21146 0.19 -0.9 890,984 + SM_b21146 0.25 +0.2 891,143 + SM_b21146 0.42 +1.2 891,216 + SM_b21146 0.50 -0.1 891,217 - SM_b21146 0.50 -0.4 891,398 + SM_b21146 0.69 -0.2 891,398 + SM_b21146 0.69 +0.4 891,398 + SM_b21146 0.69 +0.6 891,399 - SM_b21146 0.69 +0.5 891,399 - SM_b21146 0.69 +0.5
Or see this region's nucleotide sequence